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Query: IDP04224 gene: ipaC; IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05802 [Shigella flexneri], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIQNTKPTQTLYTDISTKQTQSSSETQKSQNYQQIAAHIPLNVGKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTLTPENTLDISSLSSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITGAVTQVGITGIGAKKTHSGISDQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSPQTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQNIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQLIQKLLNIIDSINQSKNSAASQIAGNIRALast
1 -61.600PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  39  62....................................................................................................GLSTRMAALLSQAIVLMSALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKLGDEGRNVQATLSRQNTVKLAADADGLKQVAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSKS............ 342
2 -32.100PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  10  68.......................................................................................................NGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILN----SNIAGREQLIDTKMQQMSNIGDKAVSREDIGRI----------------------------KPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV.. 294
3 -10.100PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  14  74......................................................................................................................................................................................................................................................................................GEHGHTISTGLNNMTQGIVGVGYANDTRQSQEEQALSDYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQAHEHLSSSVR. 158
4 -8.980PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  12  1......................................................................................................................................................................................................................................................MSESYQKLRKDFKELDFTDRLTFLAESVLMTGQGAVVGGLELAGSVVETVAGTVGSLIDATGRTGGVVGETIDRVAITVKDVSRSAGELYSDAVKNVDNVTDNAARAIGDAGVSA.. 121
5 -6.660PF07464.11; A0A212FM78_DANPL/32-181; Apolipophorin-III precursor (apoLp-III)  ali follow..  17  24...............................................................................................................................................................................................................................................TEEFNKVLKEGSESVLSQISAGSLQSALKEANGKAKEALEQAQANLQRTAEDLRKSHPEVEQQANALKAKLQDAVSKTVSETQKLVKEVSANIEQTNQKLTPKIKEAYDDFVKQAEDVQKKLHE 149
6 -6.610PF17316.2; G0VAE9_NAUCC/23-251; Petite colonies protein 10  ali follow..  11  144.......................................................................................................................................................................................................................................................................................NTTKSLTTDLQSKVQSNLQFVPSKDETLERIDTYIKPTYEMGRQTYKMVSDSYETNLSKSESVPRAIVSTGIDLGNFTIEKLKS 227
7 -6.440PF12732.7; F8EDB6_RUNSL/8-87; YtxH-like protein  ali follow..  3.............................................................................................................................................................................................................................................................................................GLATAAAAGAVIGL-EKGTEIRDKVRETANGFASDLLDALQRGRQQYTDIKDNVEDKAKELKSKADEKITEVKDR... 80
8 -6.190PF01442.18; L9KQJ6_TUPCH/68-256; Apolipoprotein A1/A4/E domain  ali follow..  4.......................................................................................................................................................................................................................................................................................DNWDTLGSTFQKVHE---HLGPVAQEFWEKLEKETEELRREINKDLEDVRQKTQPFLDEIQKKWQEDLERYRQKVEPLSAQLRE 84
9 -6.000PF01387.17; F7GY62_CALJA/1-131; Synuclein  ali follow..  11  1..................................................................................................................................................................................................................................................................................MDVFMKGLSKAKEGVVAAAEKTKQVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNI.. 88
10 -5.980PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  14  17.......................................................................................................................................................................................................................................................................................EILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQLDEDIEEQQHRVGSQSRQLGQEIENLKAQVEAARQ-----LANSIK. 107

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.