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Query: IDP04391 gene: cotJB; spore coat protein CotJB [Clostridium perfringens ATCC 13124] CPF_1067 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MKALELLDDIQKLQFYAVELNLYLDNFPENRKATEDYKEISSKLSELIERFECEYGPIRNFGQAYVENPVAWIEQPWPWEIRYLast
1 -49.500PF12652.7; R6DLX9_9CLOT/6-81; CotJB protein  ali follow..  28  1...HQLLMYIDQISFALDDTVLFLDTHPCDTEALAYYQELKEERKMAMEKYASKFGPLQNDN-VKCGCSWSWVETPWPWE... 76
2 -7.470PF16525.5; Q73YI4_MYCPA/47-123; Haemophore, haem-binding  ali follow..  16  10..........QVSAGVAAATSAYLFSHPDVNAYFAQLKQYMDANPQTHSDLEGIRQPLT........................ 70
3 -7.370PF00720.17; S5V6I0_STRC3/39-130; Subtilisin inhibitor-like  ali follow..  15  34........................GTHPAAGRACAELRGVDGDFAALQAR-TKIYDPVVVTVQG------VWQGRRVSYERTF 90
4 -6.650PF09278.11; Q2L017_BORA1/44-108; MerR, DNA binding  ali follow..  18  1LHTLQFIRRARNLGFSVEQMQELLALWRDRSRASADVKRIALQHVAELERKADELREMAD....................... 60
5 -6.580PF17200.4; I0GNI0_SELRL/45-198; Single Cache domain 2  ali follow..  11  38..RKEAADLVRNLRYDDGKGYFWVDTLLGDPSGKHFIKEMIENGRKDGGGYTDLMFAKPNETTPLPKRNYTASFAPYQW.... 133
6 -6.450PF18624.1; Q7N9T9_PHOLL/15-118; CDI immunity protein  ali follow..  11  68.APTIIVSEATCFKYVKLACEKYLQLHPEDTEQVKSL.............................................. 103
7 -6.430PF08240.12; A9CHB7_AGRFC/24-130; Alcohol dehydrogenase GroES-like domain  ali follow..  18  1..EGEVLVRIRRIGVCGTDLHIFTGNQPYLSYPRIMGHELSGTVEEAPAGSHLSAG........................... 54
8 -6.020PF11090.8; A0ZXI1_9CAUD/38-123; Protein of unknown function (DUF2833 topsan)  ali follow..  11  24......................FVTSDEVWRLSRPAKREFRKLILEYRDTMLKQYPVIWNYVWIGNKSHIRFLK......... 75
9 -5.900PF13371.6; Q1LJ97_CUPMC/200-272; Tetratricopeptide repeat  ali follow..  34.DRGLAYANLECFRPALEDLEAYVQARPDAADS.................................................. 65
10 -5.730PF10960.8; R5HTT9_9FIRM/1-70; BhlA holin family  ali follow..  13  1MEQALIEAATTQGIWVLLFISLFLYTIKNNEKLVEKQDQREVNYQKLLSDMTEKYAVVE........................ 59

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.