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Query: IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLNGGKPRLast
1 -61.400PF16693.5; Q56975_YERPE/160-413; Inner membrane component of T3SS, periplasmic domain  ali follow..  100  1...............................................................................................................................................................VRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQL...... 254
2 -55.000PF09480.10; PRGH_SALTY/16-388; Type III secretion system protein PrgH-EprH (PrgH)  ali follow..  11  1...IVRLLNSSLNGCEFPLLTGRTLF-GQSDALTASGQLPDIPADSFFIPLDHGGVNFEATEIILHELKEGNSESRSVQLNTPIQVGELLILIRPESEPWVPEQPEKLETSAKKNEPRFKNGIVAALAGFFILGIGTVGTLWIL---------NSPQRQAAELDSLLGQEKERFQVLPGRDKMLYV--AAQNERDTLWARQVLARGDYDKNARVINENEENKRISIWLDTYQLAYYRIHFDEPRKWLSRQRNTMSKKELEVLSQKLRALMPYADSVNITLMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDVEILRARQFVDSYYRTWGGRYVQFAIEL------KDDWLKGRSFQYGAEGYIKMSPGHWYF...................................... 373
3 -28.500PF16697.5; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain  ali follow..  29  2......VLSGPEAGSSHALTRAEYTVGKAP-TCDIVLSDKTISRQHLKLEVRDEHVLAIDLDNGSFCEGLRFSQ-VELRPGSAITLGTTELKLVPED.................................................................................................................................................................................................................................................................................................................................. 92
4 -17.200PF18221.1; Q2M051_DROPS/5-98; Mutator 2 Fork head associated domain  ali follow..  13  3......SING--EPAVLLQPDTVYRIGRNE-AYEFCVADESMELFHAMAIVYRAGVLVNALMGKVFVNGLENGN-VDISRKDAID-GKVKLRFGNVAAE................................................................................................................................................................................................................................................................................................................................ 91
5 -16.500PF00498.26; Q8YS22_NOSS1/91-156; FHA domain  ali follow..  23  1.......................WTIGRDR-HNGICTYDKLLSRHHAAIKVENQGFLLIDFQNGSFVNGEPVYQPIILKDGDRVRLG............................................................................................................................................................................................................................................................................................................................................ 66
6 -13.600PF17913.1; A0A067R0U4_ZOONE/7-103; FHA domain  ali follow..  16  3....LRCINN--SHEPIVLPHMEVFIGRAP---NTKITDKKCSRNQVSLCADISALEVQVGPNTTGVNGFALKKSGTLRHGDKLEILLGQYIH...................................................................................................................................................................................................................................................................................................................................... 92
7 -12.300PF16537.5; Q12KC6_SHEDO/360-419; Type II secretion system protein B  ali follow..  12  2..................................................................................................................................................................................................................................................................................................................................................................PEFSVVAHVYSSDASNRWLNVDGAELQEGDKIQDKLTLIEIRPRDIVLEIQGTKFKVP....... 59
8 -11.900PF10748.9; Q8ZLK1_SALTY/3-133; DNA utilization proteins HofP  ali follow..  16  23.........................................................................................................................................................................................................................................................................................................................................................PPEDRCRIAELSQWRYQGAVRKGEGILKDSQQKRVEEGQTLENGWTIVRLTAETLTLTTGKNCAPPQW...... 95
9 -11.800PF11356.8; B7VHF5_VIBTL/36-175; Type II secretion system protein C  ali follow..  16  37..............................................................................................................................................................................................................................................................................................................................TPQSTLDISSLQRSFGAYNPTTPVVVEQQVIQDAPKTRLNLVLVGAVASSNP-VIANRGTQYGINEEIEGT-KLKAVLVDRVIIDNSGRDETLML...... 140
10 -6.210PF16238.5; A8F8U8_PSELT/32-189; Domain of unknown function (DUF4897 topsan)  ali follow..  12  22..........................................................................................................................................................................................................................................................................................................ATAGLFFKDKNKQQQYIDQYQQASLSTFKSYFDDVSEKVGRNIEVISMNSTMTERSGILEVVETARLLN----AASVTNGIVDTSLVVPEGADILTIEPTPTKIVEN.............. 139
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.