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Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -70.100PF04294.13; R5TXH4_9CLOT/243-375; VanW like protein  ali follow..  36  1...............................................................................................................................................................................................................................................NRNENIRLAVEAIDGRILKPGEEFSFNLATGNRTKDKGYQPAGAYRNGVLIEEPGGGVCQVSTTLYNAIVSSGLTATERHSHSFTPSYIQPGEDAMVSYAGPDLKFVNSAQTTVAVRASLKDNTLKISIV.................................................. 133
2 -20.500PF12229.8; Q24UT7_DESHY/59-158; Putative peptidoglycan binding domain  ali follow..  14  1.......................................................................................IQLTPEELGITLDFERTWQNLSENT------------------GQESPSVLAIDYVMANQVLHEKLAEFNRSAVDASFKIENDQFKITPAISGEAVNVDAFFDEIKEVSLGDLPKRIS...................................................................................................................................................................................................................... 100
3 -7.450PF04473.12; Q5JHU4_THEKO/395-551; Transglutaminase-like domain  ali follow..  20  1.........................................................................................................................................................................................................................EKLRTVTKDFTKYSTTLDKAWA--DENIEYEYTKADYVDALVYNWSKLTSEQKELYDNLTRLYAPIIVYKK-------GICGDYAILTAAMLLSGVSPVSKVGHAAVAVKIE--LDQHLPPIPIG............................................................................. 136
4 -6.600PF16909.5; Q6CQ11_KLULA/2722-2899; Vacuolar-sorting-associated 13 protein C-terminal  ali follow..  11  5.........................................................................................................................................................EMLHLQPTLLHLSFVTDRVNVEEEKSSGNSAINYFINVLTMALGNIEGAQIKLNSLLLEHVRVSLP-----TLVGAIESHYAQQFFYQLHKVLGSADFL-------GNPVGFFNNISSGVMDIFYEPYQGYIMNDRPQELGIGIAKGGLSFLKKSIFGFSDSFSKMTGSMAKGLSVAIQD...................................................................................... 173
5 -5.700PF07287.11; G4N7E2_MAGO7/10-368; Acyclic terpene utilisation family protein AtuA  ali follow..  10  1.......................................................IANVSGCTGDGPLALRRAVREGPVDVITADYLAEANNAWLALEKRQDP------NKGYEPGFLRQLDRETAHIIAKNGIKVVHDLNPESMARETRALLHSYGVTGLKIAY-----------------VDGDNVMGMLEQLKAPGK----AAKHLDVEGRTLSDIDKPVLSANAYVGMGGIVAALKLGADIVISGRCCDASPVMGAAAWWHN------SETDYDRLAGALIAGHIIE---GCYATSGFKHIPDNYDQGFPVAEIANDGTFDILLQDGARGLVSKDTVTAQLVYEIQGPFYLNKIKESGKNRVTVSGITGSPPPPTTKLAICTLAGYQLEIYLFASGLDIPEK............. 334
6 -5.670PF01799.20; I0KEY2_9BACT/155-246; [2Fe-2S] binding domain  ali follow..  11  1.......................................................................................................................................................................................................................................TIEGLAKGNTLHPMQEAFLKHDGFFCTPGQICSAVAVLDETTDVRKKPGPVQLSPDEIRERMSGNLCRCGA--YPNIVAA............................................................................................................ 90
7 -5.580PF01345.18; Q9RWI2_DEIRA/209-325; Domain of unknown function DUF11 topsan  ali follow..  13  2........................................................................................................................................................................................................................................................QKTFTPAEVRAGGETTVNLTL----TNNGGDSREAVLTDLLNTPELRDFVFVSGSA-DGSSWNTVQPPNVAGIRVRTSSVPAGGSLQLSF................................................................................. 101
8 -5.270PF01119.19; A5CFB6_ORITB/216-334; DNA mismatch repair protein, C-terminal domain  ali follow..  10  21....................................................................................................................................................................................................................................................................DELSITGFVSVPTYNKASAEDQLFVNNRPVK---------DKLLMTAIRLAYQGVLARERYPIVVIFIPHFIDVNVHPTKSEVRFHDSSLVRGIIISAIKQALL....................................................... 119
9 -5.260PF13437.6; D3VAK4_XENNA/326-442; HlyD family secretion protein  ali follow..  11  19......................................................................................................................................................................................................................................................................................................GAVLQPAQNLMVIVPDEHVQLAEIQILNKDVGFVRPGQQVTVKVDAFPYTRYGTIEGKL.................................................................. 77
10 -5.190PF04718.15; Q1HR38_AEDAE/6-98; Mitochondrial ATP synthase g subunit  ali follow..  11  1..........................................................................................................................................................................................TKGSSLVSTLLTNARPKFNVFMKYAKVELTPPTPGDIPAIRDGIARIVSGARTGAWKNLTVKEAWLNSLVTAE---FYVGECIGKRH---GYE............................................................................................................................................ 93

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.