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Query: IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGKRHELast
1 -105.000PF02091.15; SYGA_PELCD/3-280; Glycyl-tRNA synthetase alpha subunit  ali follow..  66  32FNPATFLRVLGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVMKPSPTNIQELYLDSLKSFGISPSRHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQVGGIDLKPVSAEITYGCERIAMYLQGVDNVYDLEWIDGIKYGDVHHQSEVEYSTYNFEEADAGMLFNLFDMYEKECSRLAKSQLVLPAYDYVLKASHAFNLLDARGAISVTERAHYIGRVRNLARLCAEGYVAQRE................ 278
2 -57.700PF01411.19; SYA_HAEIN/6-555; tRNA synthetases class II (A)  ali follow..  12  38MNQFVFLGMDKRPYSRATTAQRCVRPNDGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVSDNFWAMGDTGPCGPCTEIFYD-IEIWNVVFMQFNRLEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTL--------------------------------IAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLR-RIIRRAVR---HGHLLGAKESFFYKLVPTLID 334
3 -8.090PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)  ali follow..  15  87....TMEKYKGKGPIKIICPGKVFR-RDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKS--FFGEERSIRLRPSFFPFTE-----PSVEVDVGWIEILGAGMVHPRVLEMSEYSGFAFGMGVERLSMLKYGIDDI.......................................................................................................................... 236
4 -6.580PF03426.14; Q59301_9GAMM/105-267; Carbohydrate binding domain (family 15)  ali follow..  11  5.............................................................................MTSGWRGNGTG--NSGVTLNSDGVSFTIGAVTDMLKPIQLEDAIITMVVNVSSLQPIVQIKGGSYPGEWGCWAGNELFTAGEDATISCTVTEGDKKFNQTEFDVQVGVQAKGTPTGVVTIKSVTVTLAPAAS-----SSSAQSSSTGSVYSAN................................. 163
5 -6.310PF06892.11; U3U1D3_9ENTR/4-160; Phage regulatory protein CII (CP76)  ali follow..  8  19............................................................................................................................THSMAELAQRAGMKAQT----LRNKLNPDQVNQLTVPELLLLTDLTEDATLIDGALAQLHCLPNELAKEKFQSYVLKATTEIGSMAASAANPERITATCRRSILEVANNGIRCMMLAALAVQTRVH-PTLASTVDAIS. 157
6 -6.230PF11811.8; G8MM09_9BURK/32-122; Domain of unknown function (DUF3331 topsan)  ali follow..  7  38............................................................................YGDQVWRAMRARTAGVCA-MSGGAIAPGDHVYAPNPRPVPGNMGAMILASVLDQT.................................................................................................................................... 91
7 -6.110PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family  ali follow..  12  31....................................................................................................VDVMDGRFVP------------NITIGPLIVDAIRPLTKKTLDVHLMEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFI-KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE 187
8 -5.950PF00071.22; RAB9A_CANLF/9-174; Ras family  ali follow..  9  5..............................................................LGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV---------DGHFVTMQIWDTA-GQERFRSLSDCCLLTFSVDDSQSFQNLSNWKKE-------FIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA........................... 166
9 -5.920PF03305.13; Y364_MYCPN/147-325; Mycoplasma MG185/MG260 protein  ali follow..  10  1......................................................................SDEAI---KKTWGDYQKVENG------LKGYTFKASVFENWHELLDFSARIARSTNIHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGGGNYDNFFYKVQDGRADFSNFKNKETSYQNLQK------VFSDYKELIDKNGLFVNKGAYSISSTSGF--FYSFAGNSAKRLKFDDGNFIEFP........... 179
10 -5.840PF16391.5; R6WU84_9BACT/270-432; Domain of unknown function  ali follow..  9  1.................................................................................................FDGVYNGTGKFFLAAKGNPIPT-TIDLGASISRIATKPRGNVREWEFWGTDVDPRQDLINNPANKDDADYQSRHGFSRGWFMIAKGESGYAPDGTVDGWTSEDREYYLNSTEYECDNTNPLTPRAFDKIRYLRIVVVNT........................... 154
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.