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Query: IDP90101 gene: sseL; deubiquitinase [Salmonella typhimurium LT2] STM2287 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDEALTLLFSAVENGDQNCIDLLCNLALRNDDLGHRVEKFLFDLFSGKRTGSSDIDKKINQACLVLHQIANNDITKDNTEWKKLHAPSRLLYMAGSATTDLSKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQGLVQESPLLSVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLVNTGDHWLLCLFYKLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISESDEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNAGQNDPATTLREFAENFLTLSVEEQALFNTQTRRQIYEYSLQLast
1 -27.100PF00770.18; PRO_ADEF1/21-198; Adenovirus endoprotease  ali follow..  12  8...................................................................................................................................................................................HFPGFLNVNKPSFAIVNTGLHWIAFAF--DNVTSTFFMFDPFGWSDMELYRKYEFQYHRILKSTAIKLVKSKEAVQCTCSAACGLFCCLFLASFYHYPTFP-GNPIIDLVDGIPPTKLHSSYGIYLTHCNQLIAWLLS 159
2 -25.100PF03290.13; Q9Q8Q3_MYXVL/1-425; Vaccinia virus I7 processing peptidase  ali follow..  44.NGYVVNKYDSSATAGKVSCIPLFALLELVDSGNLYMPASED----SDELRLKTYLVRQLVDTYKTPQKIFELRTSVPMEYFFKPKLNEKISKAVDFSQMDLRVDDLSKRGILAGENDKIIKIKIEPD----RKAWMSNKSIHKLVSQFAYGSERFLNTIPMYEKADVFLHKHVLSYILRDKIKKSDRRYVMFGFCYMSHWKCVIF--DKEKQIVCFYDSGGNIPNEFHHYSNFYFYSFSDSFGVRAGCINVEVNQLLESECGMFISVFMIVCTQTPPKGFKSIRKLY---TFFKFLADKKITLF--KGLLFN.... 379
3 -23.000PF02902.19; O65702_ARATH/175-382; Ulp1 protease family, C-terminal catalytic domain  ali follow..  11  2............................................................................................................................................HMEVLVSLLSRRLRTTLENHRSAFVDPRWSEDMQRFIKGSKTEWFKDIDTIYAPMIWNDHWVGLSI--NLGIWSVEILDPNTDLYDDAVNLLPHLIQRYCTPEFSQWSRIDGIYKNLRSGDCGPVAMKFLEIQASDKLPDKMAEITD----------KHVDAFRRQYAMDIYKQCVC 206
4 -12.100PF03421.16; A1TP56_ACIAC/85-258; YopJ Serine/Threonine acetyltransferase  ali follow..  25........................................................................................................................................LDVQNKQYLADAYNTRFPDLKLIC----------DSAQAFFSDFMTSEKPVWRSLVQLSPHSLHHVAIDVRLQDGKRTAVVLEPAIGYGMRSLAGYEPLGRNIQKYENGDMAVVQLGAQKS-HYDCIIFSLNLALCAYQRDD....................................... 164
5 -9.480PF18242.1; A0A0A2T7C4_9GAMM/114-294; Legionella ubiquitin-specific protease A domain  ali follow..  13  4........................................................................................................................................LQDHDMTL---LMPKSQGNIDVMAVINRYDPHSANAIIEALANDIYNPEF--QHIVIPVGPG-HWRGVYLTKDEVKYDLELFDPYGPQGAATLDDYLDLLARCGIPKERINIRHTGPKPRGDAYSCGDFTCAHSHKKMKEFGAPKTSYNQILIDTLDNL...................... 163
6 -5.590PF11220.8; D5MIB9_9BACT/27-167; Protein of unknown function (DUF3015 topsan)  ali follow..  15  67..ELNFENLSQEMARGQGEHLASLATLM-QHGAFFAMTQERYTSLVEAGETSPVAMVKAINEAIAG........................................................................................................................................................................................................................................................... 134
7 -5.500PF09369.10; K0TM93_THAOC/1118-1201; Domain of unknown function (DUF1998 topsan)  ali follow..  20..........................................................................................................................................................................................................IDCDHSRYENTRVLLYDQRPG-ASGVTRQLYSHIIPLFENALELLAECASCSYKAVGYDGGCPAC.................................................. 83
8 -5.400PF04910.14; A5DAW3_PICGU/281-612; Transcriptional repressor TCF25  ali follow..  123..STALNLLGFSPGEDPVGVRYYIDFYAILSEEYEFLID--FADSYLVTCYDNWNTPGIAFSTALAHLRLGNLEKARSQLKAAFMRHRYTAFRLAEQVQVSDVGVKESEVEANGRDILEAETYMIRSKMM-----WNDTKSIDFLRNELTALWTQH---------------KPESRGFFSSWMRPSASEARPISTNLLRFSILSKIPSEVWEGETFEYDLFP............................................................................................... 331
9 -5.380PF12948.7; B3L8N8_PLAKH/297-411; MSP7-like protein C-terminal domain  ali follow..  10  41IVKKLFELGGNENESSAGTSLVEVFKKVLDDEKFQKEFDNIVQGFYGAKRHNYISQEQMNNTSHTNLLK........................................................................................................................................................................................................................................................ 111
10 -5.360PF16987.5; M4EBE6_BRARP/14-95; KIX domain  ali follow..  13  16VVNKIMEALHKYLRVSGPEEMNELRKIA-------SRFEEKIFSDAVNLTDYLRKISIKMLPLDTKAPNAAGSS................................................................................................................................................................................................................................................... 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.