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Query: IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTGVRGDNAPDPSLLAQLTQNANSASAASTGKNGQVAGAKQENVDASFEDLLQDAQGTGGSKKATANQTSKSGKSEKAQASSGTSTTTSVAQASQTATAQAVHGARDSGFNSDGSATLPSPTGTEVNGVVLRKGMGTLALMGLIMTLLAQASAKSWSSSFQQQNQAIQNQVAMAPEIGNAIRTQANHQAQATELQAQQSLISGITNIVGFAVSVGGGILSASKSLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAATKLTQNMAESASKTLSQTASKSAGGLFGQALNTPSWSEKVSRGMNVVKTQGTRAAKFAGRALSSAMNISQMVHGLTAGIDGIVGGVIGAQVAQEQRMAGMAEARAEELKSLNSVQAQYASQAQQLQEQSQQSFNSALQTLQSISDSALQTTASMFNLast
1 -10.400PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  13  73................................................................................................................................................ILLLLLELARKAREMGLQQRDIENKATI-------TAQKEQVAEMVSGAKLMIAMAVVSG-------IMAATSTVASAFSIAKEVKIV----KQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQP-----------------------------LGQMANSAIQVH----------------------------QGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFG 292
2 -5.550PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  13  1.................................................................................................................................................................................MSESYQKLRKDFKELDFTDRLTFLAESVLMTGQGAVVAGSVVETVAGTVGSLIDATGIGAMLGRTGGVVGETIDRVAITVKDVSRSAGELYSDAVKNVDNVTDNAA-RAIGDAGVSASEAVRNIAGSFQKTT.................................................................................................................................. 136
3 -5.440PF04206.12; D7EBK3_METEZ/7-280; Tetrahydromethanopterin S-methyltransferase, subunit E  ali follow..  16  1.......................................................................................................................................MGVLALMGAAATIAG--ATEDLESDVGSQSNP-NSQVQLAPQMMHPHRIYNKAISGEPPSNALMCAIGGTIASV-FAITFGAAI--AAVVHGTYAASSFMGRVSSQKRFKQPLYLDIVRSHTPVIIGYAFLTTFFILVISYLMSSVLNHPFPLPLLAFIWGITVGAIGSSTGDVH---YGAEREYQNVEFGSGINAANSGDIVRYGESGLRNGIDNAWFCSKFGGPVTGIAFGMT..................................................................... 236
4 -5.350PF05501.11; A7VLV8_9VIRU/140-263; Domain of unknown function (DUF755 topsan)  ali follow..  15  31.DPGTTEGVALQEQLLKECRKTSNLMNLYQQIQQAAPQRKRKNTYPHSKTRKKKTKRSRNVSSHSAKKIHGKSHHKTPTSSSSYSSSTSSSSPSS........................................................................................................................................................................................................................................................................................................................................................ 124
5 -5.220PF12491.8; H0V4A3_CAVPO/4408-4462; Apolipoprotein B100 C terminal  ali follow..  14  8....................................................................................................................................................................................................................................................................................................................................................................................................ELSDQFSDYHEKVIALFQGLIDLSIENYHMLLRYITEVLAKLQAATA.... 54
6 -5.130PF12463.8; E4XDI3_OIKDI/446-749; Protein of unknown function (DUF3689 topsan)  ali follow..  10  4.........................................................................................................................................QVWKRNLIIGLNQLFNTFIWVTDNTDEPPLAIPPDDCSADTALKVQFLRLVHSVCDHHDNKYLLLS-LQEIIRSCAELGTEPNPSVVHVLENKLYCGEGERGLLSNILVAMKEAKETSTLRFWIARAVESFLRGPTCLVDQTFYLNRGILDHLLHLLEIKTTSEVSQGHFDLLAELMK---FNEQAFEQFEKAIGSDARFKRFMALAENSLVDSNMFIRCATLTYHKFLRAGYDFNKSKLLHYMSSKQVRARLVASLIQL------TPETLNQENVSCLNTSLVFM................ 285
7 -5.130PF07777.11; M0TXP0_MUSAM/1-89; G-box binding protein MFMR  ali follow..  25  2.................................................................ASNEAATPPKSNKASSPVQSRETPANPPYADWATMQAYYGH-GMIPPTYLSGHVPHP............................................................................................................................................................................................................................................................................................................................. 57
8 -4.930PF09605.10; R5JZ17_9CLOT/12-197; Hypothetical bacterial integral membrane protein (Trep_Strep)  ali follow..  9  1....................................................................................................................................................................................................GKDLISIGIFSAIYFVLNFVCMLVSGLHPIIWILMPALIAVVTGIPVLLMCARVQKFGAILLMGMVTGLLYFVTGQFTVILLITFAIACILAEVIRLLTGYDKFWGNAVAFACFS-LMKESFLAQISSQGMA---------ESYVEALRNLSSTGMLVVLFLAPIVGAFLGALIAKGMFRKH............................................................. 183
9 -4.620PF15559.6; I3JQM2_ORENI/26-137; Domain of unknown function (DUF4660 topsan)  ali follow..  12  1.................................................................SDSDDQEGSRKKKAGTEAEGSARSSLPGTKREAGGAPLPKPDELFRSVSKPAFLYNPLNKQID---------------------AAREFKPWKTN-ESYTAEPEKKKGPPPGMDMAIK................................................................................................................................................................................................................................................................ 112
10 -4.580PF09228.10; A6UKH7_SINMW/1-101; Prokaryotic Transcriptional repressor TraM  ali follow..  18  47.............................................................................................................................................................EGVYEEWARATTDPSVPAAVLKSL---QDEYVARQKKSEAQQDELSKIIDALGYVPDL................................................................................................................................................................................................................................ 101
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.