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Query: IDP90826 gene: alaS; alanyl-tRNA synthetase [Yersinia pestis CO92] YPO3305 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLTGDTLDGETAFRLYDTYGFPVDLTADVCRERNLKVDEAGFEQAMEAQRRRARESSGFGADYNSLIRVDSASQFSGYDHVQQHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYGQAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTMGDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQVGGKGGGRPDMAQAGGTDVQALPAALASVEAWVASRMLast
1 -149.000PF01411.19; SYA_HAEIN/6-555; tRNA synthetases class II (A)  ali follow..  74  1......EIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSRATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWLGLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALSQVKDGILSGEVAFKLYDTYGFPLDLTADVCRERNITIDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRVDGETKFEGYTEVESQAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGDSGYLSTQSVTFNVKDTQKYGQVFGHIGELTQGSLKVGQSVNAIVDAKR............................................................................................................................................................................................................................................................................................................................... 550
2 -51.800PF02091.15; SYGA_PELCD/3-280; Glycyl-tRNA synthetase alpha subunit  ali follow..  15  2.....QELILALQNYWAKQGCIIQQPYDMEK---------GAGTFNPA-TFLRVLGPEPWNVAYVEPSRRPDGRY--GENPNRLQHYYQFQVVMK------PSPTNIQELYLDSLKS---FGISPSRHDIRF----------------------------------VEDDWESPTLGAWGLGWEVWLD--------------------MEITQFTYFQQVGG-----IDLKPVSAEITYGCERIAMYLQGVDNVYDLEWIDGIYEKECSRLAKSQLVLPAYDYVLKASHAFNLLDARGAISVTERAHYIGR--VRNLARLCAEGYVAQ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 276
3 -8.570PF07973.14; SYT2_BACSU/172-221; Threonyl and Alanyl tRNA synthetase second additional domain  ali follow..  30  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ITLYQQGEF-VDLCRGPHLPSTGMIKAFKLTRVSGANEVLQRV.................................................................................................................................................................................... 49
4 -7.940PF01780.19; C4M0M9_ENTHI/4-88; Ribosomal L37ae protein family  ali follow..  16  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RTKKVGIVGKYGTRYGASLRIAQHSKYVCPFCCKEAVRRTA-CGIWECKGKKQIAGGAYTLSTISGATVRSTVRRLRD................................................................................................................................................................... 85
5 -7.650PF17072.5; SPIKE_BRV1/1-1583; Torovirinae spike glycoprotein  ali follow..  14  255.......ISSDWVVAFKSKASAIILRSQLIPYHYLSLVNFSPNYALFSPLCKSLRQQSATYSA-AQECYNNALYLPDC---------YTLFSILFSWDY-TFLQLPTTGYLGQTVSQGRMLNLFKDKFYRTNDGPGGDIFAVVVKQVPVIAYSAFRIEQQTGYLAVKCNMWSIAAANPSGPIQQVSMPVLSTGAAGVYMHP------MIEHWVTLLAQSSVYQPSMFNMGVNKSVTLTTQLQAYAQVIQALLSFKQADIDATDVDTVARYNVLILMWGRKYAVIYNQLPEWSYPLFKGGVGDSRKKFLVTTKIHQTASHFPFIAGYLDFLDYKYIPKYLSTMVPSILQVYETPQLFVIIVQCVSTTYS--LRNPHTIYRSYKLGTICVLVPYSSPTDVYSSFGFTVQTTDDILPGCVGFVQDSVFNYTLRNYYRTTTPVTNVPIEEVPLQLEIPTVSLTSYELKQSESVLLQDIEGG------------IVVDHNTGSIWYPGGQAYDVSFYVS-ELPSTLANFTSCLDYICFGNQQCRGEAQTFCTSMDYFEQVFNKSLTSLITALQDLHYVLKLVLPETTLELTEDTRRRRRAVDFSDTISLLSESFERFMSPASQAYMANMMWWDEAFDLSSAPSLSSISSW-HSYSSRTPLIS--NVKLSMPKLPKASTLSTIGSVLSSGLSIASLGLSIFSIIEDRRVIELTQQQIMALEDQITILAGYTTKNFEEIQSSLNTLGQQVQDFSQTSALSLQQLSNGFEQITQQLDKSIYYVMAVQQYATNQLNELSQAVYKTQDMYITCIHSLQSG------VLSPNCITPFQICHLYQVAKNLSSGE................................. 1273
6 -7.220PF06016.11; VP1_AQRVC/1-1298; Reovirus core-spike protein lambda-2 (L2)  ali follow..  9  358............................LYWPESPFVPPIGPFYAPFRPVNFPFTTGSYTVVPDASRPLRLLPQYRTVQQADDAYEDTALSPL----THGFCVTGGVSTSIYDISGDPTAYPPAQLVDTPNDYFDRERMADLFRRLRAPADRSAIKLVNPTTANPVLDTSFSMAYLGASS------------------AHANADEPVILADIR----------SGSIPGLPIPRRIVQFGYDVVHGSLLDLSRAVPTGTFGLVYADLDQVEDAGTDMPAANRAAIAMLGTALQMTTAGVLKVNFPTRAFWTQVFNLYATHATTLHLVKPTIVNSSEVFLVFGGRQSNGALRSTTALQRALLSLYARN-AAIDRAVTHIPFFGVPDDGTSDLGIDAVRLFDP-SNALASLVSRVVPSSIMFTRVPSNGPVSTTIYGKRTFLSNRRRARLRDVPMLITTTLVHQRRFTTPPTFTLFSSEAVPVTTLVAAGYNSFISEQTRNPNL--HLLDLGTLIPPTLQVTMSDARPCAELM---------DPALTAYVQGDYSTAAFWNGIRCDSATAIFT------LGAAAAAAGTDLIAFVQQL----IPRIVAAGGTRMWLQLNTPLYEVSSL-PDLIDIDLRDRVYRFNGGEEPYADPVPLQQAIAALLPAAALSWHTLSPTCDWLPYIIGVGSPLNLSDINTAI................................................................................................................................................................................ 1017
7 -7.130PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase  ali follow..  14  594.................................................................................................AYARYLKQIRLGFDLSYIASTLINHADIAKELVRLFRTEQAILAALDNVAVLNEDRILRRYLDLIKATLRTNFFQADASG---PKFEIFV-RFGDVARGGLRWSDREEDFRTEVLGLVKAQQVKNAVGAKGGFVPRKMPVGGSRDEVMAEGIACYRIF-LDITDNLKEGVPPVNVVRHDADDPYLVVAADKGTATF--SDIANGIAAEYGF-----LGDAFASGGSAGYDHKGMGITAKGGWVSVQRHFRER------------------------GIDVQKDNVTVIGIGDMAG-------DVFGNGMLLSDKLFNHMHIFIDPNPDAAKSFAERKRLFDLPRSSWADYDSKLISEGGGIFLRSAKSITITPQMKARFDIAADKLAPTELLNALLKAPVDLLWNGG----IGTYVKSSKESHADVGDKANDALRVDGRELRAKV-VGEGGNLGMTQLGRVEFGLH--GGASNTDFIDNAGG--VDCSDHEVNIKILLGEIVSGGDMTEKQLAEMTDDVSELVLGNNYKQTQALSLAERRARERVGEYKESAGKLDRALEFLPSDEEL-GLTRPELSVLISYSKIDLKESLLKSLKREIVSTQIANDLVNHMGITFVQRLKESTGMSAANVAGAYVIVRDRLPHWWAQIEALDYKVPAELQLQLMDELMRLGRRATRWFLRSRRNELDAARDVAHFAPRIEALVGRLDELLEGPARVEAGTPEELARVVAGTSHLYTLLPII--------EAADVTGKDASEVATAYFAVGGALE... 1437
8 -5.910PF04071.12; R5BRD8_9FIRM/12-95; Cysteine-rich small domain  ali follow..  14  3.............SFFCHKNCEYFPCHETKDPENFNCLFCYCPLYALGDKCGGNFRILDGGIKDCSKCMLPHRREN............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 65
9 -5.900PF02272.19; Y1633_METJA/328-463; DHHA1 domain  ali follow..  12  5................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IDASILNMIENPEISTEVMEVLAKAVMNRRVVKGNIALAYVGEISNRDALPKAADFLLKMEGISTTFVFGIVGDEIHISA---RTKDLRLNLGEILNKAF-----GGGGHQTAAAA--LGIFKAVSDKEALRKLVEEAI 136
10 -5.810PF07704.11; A7IPR8_XANP2/1-84; Rv0623-like transcription factor  ali follow..  14  3...................................................................................................................................................................................................................................................................................................................................LNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGYGDTAQARLLGELRAIRERVARLPELDTRSDEEIVGFDEHGIP...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 84
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.