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Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -115.000PF02091.15; SYGA_PELCD/3-280; Glycyl-tRNA synthetase alpha subunit  ali follow..  71  1.................................FQELILALQNYWAKQGCIIQQPYDMEKGAGTFNPATFLRVLGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVMKPSPTNIQELYLDSLKSFGISPSRHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQVGGIDLKPVSAEITYGCERIAMYLQGVDNVYDLEWIDGI----KYGDVHHQSEVEYSTYNFEEADAGMLFNLFDMYEKECSRLA--KSQLVLPAYDYVLKASHAFNLLDARGAISVTERAHYIGRVRNLARLCAEGYVAQRE............. 278
2 -54.200PF01411.19; SYA_HAEIN/6-555; tRNA synthetases class II (A)  ali follow..  14  1...................................EIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTFLGMDKRPYSRATTAQRCVRPNDLENVGYTARMLGNFSFGDYFKQDAINFAWEYLTSIWNKDVGVPAERIIASDNFWAMGDTGPCGPCTEIFYD-IEIWNVVFMQFNRLEKLPRPSVDTGMGLERISAVLQHVNSNYEIDFKTLIAKTAEIVGATDLTNK---------------------------------------SLRVIADHIRSCAYLIADGVIPSNEGRGYVLRIRRAVRHGHLLGAKE............... 322
3 -7.430PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)  ali follow..  14  3.................DVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALTMEKYKGKGPIKIICPGKVFRRDDDD-------ATHSHQFMQIEGLYVDHGVRM-VLQAFAKSFFGEERSIRLRPSFFPFTE-----PSVEVDVGWIEILGAGMVHPRVLEMSEYSGFAFGMGVERLSMLKYGIDDI............................................................................................................................. 236
4 -6.310PF16391.5; R6WU84_9BACT/270-432; Domain of unknown function  ali follow..  10  1.................................................................................................................................................................FDGVYNGTGKFFLAAKGNPIPT-TIDLGASISRIATKPRGNVREWEFWGTDVDPRQDLINNPANKDDADYQSRHGFSRGWFMIAKG--EQYKPSGYAPDGTVDGWTSEDREYYLNSTEYECDNTNPLTPRAFDKIRYLRIVVV.......................... 152
5 -6.000PF17679.1; Q8SDC5_BPDPK/1-273; gp37/Dip protein  ali follow..  11  20.......................................................................GLHHPHKLEDISVHWVFNPVDISVFVTCATMSSHNTHYTFKPQSSPDDAMVREYVLSR----IIADNLKYVDNLYLAAGAVICG------------------EYISDGNVVGIHIADGVGGNKLILVIEFMPGVHVDDISDKLIKSSSYQGIFKTDNLEEFEFLVDKKNANNVKELILAYTDYFANKLAF-KDPAEPAVEMYQFIDRTEVYFSFEGCHPDVEEVLFTIKIVRYNQPLNSTAMQ----LKNPLLSHIRT. 255
6 -5.580PF03929.16; J7QMM3_METSZ/32-395; PepSY-associated TM region  ali follow..  9  20LSGAVLAFREDIDELLNASIMRVDTPAQASYRSPDDILGAAFAAMPADGKAERLTMPRHPGSAAAITYMVETDDLETDVYQLFVDP-----------YTAKVTGRRLYQHRGASFSQPLIPFLMTFHWTLLLGFNNAYVL-----------GSLAILVFFILVGLYLWLGLKIKWGASAERFAYDVHRSVGI--LIMLSTGIAMIFKPATRSVTTLFSPVRPKIDFGKSTPLP-GQSPIGVGAAVAAADEIFPDGRLHWILLPSAPSGVYVVGKQSDEEPNRTKTSRNVSVDQYSGRVLQVQDRNGF....................... 316
7 -5.400PF03702.14; ANMK_ECOLI/4-367; Anhydro-N-acetylmuramic acid kinase  ali follow..  11  7MSGTSLDGVDVVLATIDEHRVAQLASLSWP----VSLKQAVLDICQGQQLTLSQFGQL----------TQLGQLFADAVNALLKEQNLQARDIVAIGCHGQTVWHEP-----TGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHMVLNIGGIANLSLLIPGQ----PVGGYDTGPGNMLMAWIWRQAGKPYDKD-LPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPR-DVQATLAELTAVTISEQVLLSGGCERLMVCGG------GSRNPLLMARLAALLPGTEVTTTDAVGIS........ 322
8 -5.110PF01498.18; A0P9K9_ONCMY/68-139; Transposase  ali follow..  13  2..............................................................................................................................................................................................................................................................................RRLIRDAAKRPMITLDELQRSTAEVGDSVHRTTISGVLHKSGLYGRVARRKPFLKDIHKK 61
9 -5.070PF15045.6; G5AWJ2_HETGA/207-286; Clathrin-binding box of Aftiphilin, vesicle trafficking  ali follow..  13  1.SRKLWRNLENTNATSISQCLWSKSRCQENLFLVLGVDVARKSPSGSQGHILRGPDLEEPE............................................................................................................................................................................................................................................................................. 60
10 -5.040PF07889.12; B6TRT4_MAIZE/96-218; Protein of unknown function (DUF1664 topsan)  ali follow..  9  12......................................................................................................................................................VGALGYGY-MWWKGISFSDLMYVTKRN---MANAVSSMTKHLEQVQSSLAAAKRHLTQRIEKLDDKLDQQKALSGQIRDDVTDARLKLENIGSEIKNIKELVWGLDGKIDSMEA.................................................................. 121
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;