current user: public
If you have questions about the server, please let us know.

Query: IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .
# Score Template Links and tools%idFirst MSSIALDRTQTQVYIPESGQTTLENVQKTASTATPSVTVENVKSRDADTLNTGRVKVQLDAPNAAVSDKVTDLTLKAMAQLQKIVDTIAKALHAVADQTGSIAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGVGAAAGALMIAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLSRPATVLast
1 -14.900PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family  ali follow..  23  3...................................................................................................................LAASLLGVKALGDNANLKALALKIREQGAERQNEDLRKQVDKAVEDQAKAQKAGIFSAIVDWIVSIAEVVSGIGKLLIG---AGGAMDVAAGCSGLVKAACETLALID................................................................................................................................................................................ 113
2 -13.800PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  11  71...................................................................................................................LSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSG---------------------AKLMIAMAVV---------SGIMAATSTVASAFSIAKEVKIVKQEQILN------------------SNIAGREQLIDTKMQQMSNIGDKAVSR---------EDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFG..... 292
3 -8.240PF05461.11; M3YMB0_MUSPF/26-333; Apolipoprotein L  ali follow..  11  62.....................................................................................................................................FPELKLKLEERIRKLHELADEVDRVHRDCTIANVVANSTGVVSGLLSILGLGLGASLALLATGMGLGV---AATVTQVSTSLVEDSSESSAKAQASHLTSTDFDKGEVIAKVLHRIPQIYSLTGTCFRALQNIANNVNARRLMTSQRISVRGGRQVQKAFGGTALAMTKGARIMGAVTAGLSLAMDV---LVKDSEHLQKGAKTESAEDIRQQARELESKLKKLSEIYEIL................................... 308
4 -7.650PF13988.6; D8MQN7_ERWBE/128-293; Protein of unknown function (DUF4225 topsan)  ali follow..  16  1.........................................................................................................................................QNLKQEHEYLTIQDRMLRSGHAVVSASVQFYHEHEKIIGYIIDGIGVVVGGLQMVAGIGVVAGSSLVLSGAGSTIESALLGRANPTNFMRNEDAAEFMGFDKRLGFLAYQAVDFTTSYYGVLKLSLKPEAWRL................................................................................................................................. 150
5 -7.230PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  15  72...................................................................................................................SQAIVLMSALRTADNAL---------STKLSLVSFDATK--ATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALK-----LGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGVAELSAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSK.............. 341
6 -7.140PF04103.15; T176B_MOUSE/60-224; CD20-like family  ali follow..  17  1.................................................................................................................................................................................SLGVTQILLGLVSCALGVGCASGSVAILAGVGTIVHE------------------KRQGKLSGQVSCLLLLACIATAAAATVL........................................................................................................................................... 80
7 -6.630PF11166.8; Q2FYD6_STAA8/2-99; Protein of unknown function (DUF2951 topsan)  ali follow..  17  29..................................................................................................................RIEDSLRTQEKIYDKLDRNFEELRRDKEEDEKNKEKNAKNIRDIK---------GLIGTILS-VIALLKTIFGI................................................................................................................................................................................................................... 98
8 -6.120PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  14  1.............................................................................................................QLNELMVQLGELFGKLRDVLRQYQQAQQSNAFKMQKTAFETRVDSIDKDFQAKQ--------------AQAVAQIVGGIAQTVGGGFGEHGH-TISTGLNNMTQGIVGVGYANDLTRQSQEEQ------------------------SDYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQAHEHLSSSV................................................................................................ 157
9 -5.710PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  10  2.......................................................................................................................................................................PLVPSSAQSGLGGVVENLGATV-LGAGVQDGLGSIGSNPNPIGTT------ASTGNVVTGVGNTVTSAGTLVGGLTGQLSPLAPVTTPLAGALTQVGQAVTNAGTTLGTTVEQLTQQLSTAIVPLTSQIIGGTQTVGATTGMGTPANSLLGTLGGAIANGGSTL.................................................................... 167
10 -5.630PF03229.13; Q9IZ54_CHV1/1-129; Alphavirus glycoprotein J  ali follow..  21  3........................................................................................................................................................................SLLFVVGAWVLAAVTDLTPKAALATGANATAGVANATAGVANAAEATSPGAAATSAAVVTPPPTDSTQTAETPGPSPPTDFALPLVIGGLCALTLAAMGA................................................................................................................................... 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;