current user: public

If you have questions about the server, please let us know.

Query: IDP92795 gene: csy2; Csy2 [Vibrio phage ICP1_2011_A] AGG09392 [Vibrio phage ICP1_2011_A], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .
# Score Template Links and tools%idFirst MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAVSYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTLCFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELASVKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRDKFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIYNDLast
1 -88.800PF09614.10; I1YH08_METFJ/6-299; CRISPR-associated protein (Cas_Csy2)  ali follow..  17  1....ILLPHIKVQNANALSSPFTIGFPAMTAWLGAVHALQRKLNVEFSAIGVVVHHFDLQTYKGPGDFVHSIIGTGNPLEPKSVRPSFIEEARCHLEVSLVIEYNCIEASQMLERLHQLLLGNIKLAGGDILSCGTP-----EIVRDFDMAKRKLMPGYALVERRDLMQEAPNGERGWIVPIATGFHGISDLGNALNQRDPDTPHRFAESLVTLGEFKMPYRLASPEDLLWRYLVEPENNL....... 291
2 -6.020PF18476.1; V6L034_9ACTN/33-280; PIN like domain  ali follow..  1.........VIVLDTNVLLSLYEYTETSRREVLSALEQTAGRLWMPYQGLEFVRGRRSTLESRKRALSDAASEVNKKLMAARKAIVDAKNVVCVQLD-QEIAGLAALVADSGVDAHLDVYRHEFKRHLDMLKADHDLALNSVDADDPILRRIAKLYGEGIGEQRRRLEEATAYRFPNKIPP---GF---------SDSDKETPLKSAGDFLLELIEYICQLPLSSRRVLFWYEQGSGSNKS....... 242
3 -5.880PF09704.10; Q3SR91_NITWN/4-221; CRISPR-associated protein (Cas_Cas5)  ali follow..  10  14............TRPEMKVERVSYDVITPSAARGILEAI-RFQSIRRNEVGSKAPAGKIKSAMKRGDLEGLQLLVDEGRQQRASTVLVKPAYVIVARFELTGRGEEGDNEGKHLDIFNRRARRGQCLG........................................................................................................................ 152
4 -5.630PF01241.18; K9YHX5_CYASC/18-87; Photosystem I psaG / psaK  ali follow..  29.......PDLPISKPDVWKN---FGVPELLATVSLGHILGAGFILGLSNAGL.................................................................................................................................................................................................... 70
5 -5.380PF02622.15; Y2743_CUPMC/19-177; Uncharacterized ACR, COG1678  ali follow..  10...................................................................................GSVVYLCEHNERGALGLVINRPIDIDMATLFDKIDLKLEIQPYFGGPVQTERGFVLH---DPVGIYVSSLAVPGGLEMTTSKDVLEAVANGSGPHRFLLTLGYAGWGAGQLEDELSRNGWLTVQADPEI----------FSVPPEERFA................ 152
6 -5.110PF10090.9; Q20YL4_RHOPB/92-213; Histidine phosphotransferase C-terminal domain  ali follow..  11  6......................................................................................NMARGHLEDDKTKIEWNLPRILLPKNKVKLLLNMLVIAQQTGGVL--------TVEAVGEGDAMGFRVAASGLNARTQTNIVDMLSGAHAGSIDAHAVQPYYTRLLAQACGFS................................................. 113
7 -5.100PF06362.11; Q9ZBE1_MYCLR/1-97; Protein of unknown function (DUF1067 topsan)  ali follow..  3...................................................................................................................................................................................TPTPQGHDMHTKTPLPRGANNYPHTHACIDIAFSTAQVPSP----------WHHQHVDQA......... 52
8 -4.930PF14606.6; F0SBL3_PSESL/182-361; GDSL-like Lipase/Acylhydrolase family  ali follow..  6................VYGTSIAQGASASRAGLAWTAFLGRKVNAPVVNLGF---------------------------SGNGRLEKELVDLIAAEEASIYV--LTAFSDDEVYQRLMYALITLRSKHPKTNNSQLEYQRVNRNFRKFVAENISGKDNNVYVVSAESIGLGVDDTIDGVHPSDMGMKKYAD......................................................... 173
9 -4.920PF03509.14; G3H2R1_CRIGR/267-333; Gap junction alpha-8 protein (Cx50)  ali follow..  29  6........................................................................................................................................................................................GYQLLEE--------EKIVSHYFPLTEVGMVE................................ 29
10 -4.900PF16724.5; COMPL_BPT4/1-234; T4-like virus Myoviridae tail sheath stabiliser  ali follow..  10FRRYALFSNIQIKRQLESGDKFI--VPITYAFMMKLNKINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPH............................................................................................................................ 141

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.