current user: public
If you have questions about the server, please let us know.

Query: IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .
# Score Template Links and tools%idFirst MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPILast
1 -52.200d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  37  2..........................KIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKG-VDIIVVACNTASAYALERLKKEINVPVFGVIPGVKEALKKSR............................................................................................................................................................. 105
2 -43.200d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  20  1..................................................................................................................................NKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEF---KGKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFIKDDG--------SSSLELFFTDLSPNLQFLIKLILGRDYPVKLA 143
3 -15.700d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  16  2...................................................................................................................................KKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGGVKAGNLKLGRELLLKTAKIL--EERGAECIIAGCTEVSVVLKQDDL----KVPLIDPMDVIAEVAVKVALEK......................................... 113
4 -15.600d2zska2 c.78.2.0 (A:115-226) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  19  2...................................................................................................................................RKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDV----SVEVFDSAEIHMRKLIELASE.......................................... 112
5 -14.000d5hqta2 c.78.2.0 (A:117-230) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  15  2...................................................................................................................................TRVALLGTRYTMEQDFYRGRLTEQFSINCLIADERAKINQIIFEELCLGQFTEASRAYYAQVIARAEQGAQGVIFGCTEIGLLVPEERS----VLPVFDTAAIHAEDAVAFM............................................ 112
6 -9.810d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  14  2.........................KTIGI----LGGMGIVIKTPAKRDQEHPKVIIFN--NPQIPDRTAYILGKGEDPRPQLLEECGADFIIMPCNTAHAF-VEDIRKAIKIPIISMIEETAKKVKEL.............................................................................................................................................................. 114
7 -9.760d2zska1 c.78.2.0 (A:1-114) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  16  2.........................KKIGI----IGGTTYIEISREKFEKYFIIYSINFKEFFQNPEGWEGRKKILINAAKAL-ERAGAELIAFAANTPHLV-FDDVQREVNVPMVSIIDAVAEEILKR.............................................................................................................................................................. 113
8 -9.130d5hqta1 c.78.2.0 (A:1-116) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  16  2.........................KTIGL----LGGMS---------WESTIPYINEGIKQRLGGLHSAQVLLHSVDFHEIELQRAGAEGIVLCTNTMHKV-ADAIESRCTLPFLHIADATGRAITGA.............................................................................................................................................................. 115
9 -7.500d4b2oa_ d.159.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  10  11.................................GSPGREYVPKLKTKYKPHFTIINGENAAHGKGLTEKIY-----------SLIQSGADAITMGNHTWDKKEIFDFIDDVPNLVRPATPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLALGWY---------TDGRASAVVGTHTHVQTADNRI---LPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVIDIDDQTKKAVKI 251
10 -7.420d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  15  1........................TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIY-EKQLVPFGVAPDHPEVKNVINTFTQTARSDRCA-FYGNVEVGRDVTVQELQDAYHAVVLSYGAEDXKSRPIDKRGPTGVITTTMTDSFLTGQILLQDLKA.................................................................................................................................. 167
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;