current user: public

If you have questions about the server, please let us know.

Query: IDP02003 glutathione-regulated potassium-efflux system ancillary protein KefG [Yersinia pestis CO92] YPO0190 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180
# Score Template Links and tools%idFirst MMLQPPKVLLLYAHPESQDSVANRVLLQPVQQLEHVTVHDLYAHYPDFFIDIHHEQQLLRDHQVIVFQHPLYTYSCPALLKEWLDRVLARGFANGVGGHALTGKHWRSVITTGEQEGTYRIGGYNRYPMEDILRPFELTAAMCHMHWINPMIIYWARRQKPETLASHAQAYVQWLQSPLTRGLLast
1 -69.100d4fgla_ c.23.5.3 (A:) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  32  1...AGKKVLIVYAHQEPKSSLKNVAVDELSRQGCTVTVSDLYAMNFEPRADITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEE. 218
2 -38.600d2z98a_ c.23.5.3 (A:) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  1.....SKVLVLKSSILAGYSQSNQLSDYFVEQADEITVRDLAANPIPVLDGSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTEGLVTGKKAIVITSRGGIHKDGPTDLVTPY--------LSTFLGFIGITDVKFVFAEGIA-YGPEMAAKAQSDAKAAIDSIVSA.. 200
3 -30.000d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  13  1......KIAVINGGTRSGGN--TDVLAEKAVQGFDAEHIYLQKYPIQP--DYDSIIERILQCHILIFATPIYWFGMSGTLKLFIDRWTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKI---------KGLPLIQQFEHIFHFMGMSFKGYVLGEGNRPGDILRDHQALSAASRLLKRSDA... 179
4 -23.200d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  1....MNKIFIYAGVRNHNSKTLEKRLSSIISSRNNVDISFRTPFNSELEIDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIERI-----GGWSHLFRLAGKFVVTLDVAESNGS------------DNVSEYLRDIFSYMGGQILHQVSITNSKDIAEAQLMEATYKIEDVLEG...... 179
5 -21.300d1ydga1 c.23.5.8 (A:3-201) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  12  1...APVKLAIVFYSST-GYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGL-----WSSGKLANKTFSAMTSAQNVN................................................................... 124
6 -18.300d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  12  1....MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVD--------EATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDV------LGDLWGEIDGKIACAFSSSGGWGGGN----------EVACMSILTMLMNFGFLVFGVTDYVGAGEPRSEEEKEACRRLGRRLAEWVAI.. 164
7 -17.300d3gfsa_ c.23.5.4 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  13  1.......MLVING--TPRKHGRTRIAASYIAALYHTDLIDLSEAEQSELLKVQELKQRVTKADAIVLLSPEYHSGMSGALKNALDFL---------SSEQFKYKPVALLAVAGGGDGGINA-----------LNNMRTVMRGVYANVIPKQLVLKPVHIDVENATV--ENIKESIKELVEE.. 160
8 -17.000d2q62a_ c.23.5.4 (A:) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  12  23FSTHRPRILILYGTVSYSRLLAEEARRLLEFFGAEVKVFDLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWI-------TGSIRPTQGKTLAVMQVSGGSQSFNA------------VNQMRILGRWMRMITIPNSSVAKAFQEFDANGRMKPSSYYDRVVDVMEELV 198
9 -16.700d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  1.....IKVLGISGSLRSGSYNSAQEAIGLVPPGMSIELADISGILYNEDVYVERFREQIRAADALLFATPEYNYSMAGVLKNAID------WASRPPEQPFSGKPAAILGASAGRFGTARAQYH-----------LRQTLVFLDVHPLPEVMISSAQNAFDAQGRLLDDKARELIQQQLQA.. 171
10 -16.500d3zhoa_ c.23.5.8 (A:) automated matches {Escherichia coli [TaxId: 405955]}  ali model 3D-neighbors follow..  19  1.....AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVV-FEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQT-----GGLWASGALYGKLASVFSSTGT..................................................................... 115
11 -16.000d3u7ra1 c.23.5.0 (A:2-182) automated matches {Paracoccus denitrificans [TaxId: 318586]}  ali model 3D-neighbors follow..  10  1....VKTVAVMVGRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLHYNDDLWVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWA-----TRPYGQNSWKGKPAAVIGTSPGVIGAALAQAR-----------LKNDLLHVGTVMMS--AYAADGSVTDEKTAKFLQGFVDAFVDWIEK.. 179
12 -15.200d3d7na_ c.23.5.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  11  1....SSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDA-------------EDGWAALDAADAIIFGTPTYMGGPSWQFKKFADAS-----SKPWFSAKWQDKVFGGFTNSASLNG.................................................................. 100
13 -14.600d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  4.....GKVTVIYDSMYGFVENVMKKAIDSLKEGFTPVVYKFSDEERPAISEILKD---IPDSEALIFGVSTYEAEIHPLMRFTLLEI---------IDKANYEKPVLVFGVHGWAPSAERT--------------AGELLKETKFRILSFTEIKGSNM-DERKIEEAISLLKKELE....... 148
14 -13.200d2ohha2 c.23.5.0 (A:255-403) automated matches {Methanothermobacter thermautotrophicus [TaxId: 145262]}  ali model 3D-neighbors follow..  10  1...VDERVTVIYDTMH-TRKMAHAIAEGAMSEGVDVRVYCLHED------DRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYL------RGLKFNRTLTRKALVFGSMGGNGGATGT--------------MKELLAEAGFDVACEEEVYYVPTGDEDACFEAGRKLAAEIR....... 149
15 -12.900d4d02a2 c.23.5.0 (A:250-400) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  1...QEDRITIFYDTMSNNTRMMADAIAQGIAEDPRVAVKIFNVA----RSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEM---------TGLRFRNKRASAFGSHGWSGGAVDR--------------LSTRLQDAGFEMSLSLKAKWRPDQDAKLCREHGREIARQWAL...... 149
16 -12.300d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  1.....MKVGIIMGSVRAKRVCPEENSEELIDQKLKIQVVDLQQIA-YADSKTRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE----------WHGKPALV-VSYGGHGGSKCNDQ------------LQEVLHGLKMNVIGAVKIPVGTIPLPEDIVPQLSVHNEEILQLLASCI 185
17 -11.900d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  11  3.....NKVVIFYDSMWHSTEKMARVLAESFRDGCTVKLMWCKAC------HHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYI---------KGLRPQNKIGGAFGSFGWSGESTKV--------------LAEWLTGMGFDMPATPV--KVKNVPTHADYEQLKTMAQTIARALKAKL 150
18 -11.600d2q9ua2 c.23.5.1 (A:254-412) Nitric oxide reductase C-terminal domain {Giardia intestinalis [TaxId: 5741]}  ali model 3D-neighbors follow..  13  2...CQKKVTVVLDSMYGTTHRMALALLDGARSGCETVLLEMTSS------DITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYV--------RGLTLIKGKPAFAFGAFGWSNRAVP-------------DIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGKRAIA... 152
19 -9.530d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  12  1....MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPQALRRL-RVVFAPLEADRHPDHTAASRLAVAAV......................................................................... 122

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.