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Query: IDP04224 gene: ipaC; IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05802 [Shigella flexneri], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIQNTKPTQTLYTDISTKQTQSSSETQKSQNYQQIAAHIPLNVGKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTLTPENTLDISSLSSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITGAVTQVGITGIGAKKTHSGISDQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSPQTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQNIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQLIQKLLNIIDSINQSKNSAASQIAGNIRALast
1 -6.690d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Tobacco hornworm (Manduca sexta) [TaxId: 7130]}  ali model 3D-neighbors follow..  10  36...............................................................................................................................................................................................................................................TQDFNKALKDGSDSVLQQLSASSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLHE 161
2 -6.500d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}  ali model 3D-neighbors follow..  11  17....................................................................................................................................................................................................................................................RWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEET-RLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQK 136
3 -5.570d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13..........................................................................................................LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQ-----------ILQEVNDFAGQRELVAENLS---------VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAANA 249
4 -5.420d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}  ali model 3D-neighbors follow..  15  4................................................................................................................................................................................................................................................................................................SLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKL---DNDALNNIINNAR. 74
5 -5.320d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  4...............................................................................................................................................................................................................................................EFPEQKAGEAINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDK--RIRTNLLQVCERIPTISTQL--KILSTVKA 123
6 -5.120d2b0ha1 a.24.9.2 (A:1843-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  38...................................................................................................................................................................................................................................................................................EELGPLANQLTSDYGRLASQAKPAAVAAEEIGAHIKHRVQELGHGCSALVTKAGASDVYTKKELIECARRVSEKVSHVLAALQAGNR. 131
7 -5.090d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  84...................................................................................................................................................................................................................................................................................TAVGCAVTTISSNLTEMSRGVKLLAALLEDNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQ........ 166
8 -5.080d3ryce1 a.137.10.1 (E:5-145) Stathmin 4 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  49.........................................................................................................................................................................................................................................................................................................KLEAAEERRKKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQ. 120
9 -5.060d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  56................................................................................................................................................................................................................................................................................NTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKK-LVEVEDEKIEAIKKKEKLMRHVDSMIEDFV................ 129
10 -4.690d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. J3 [TaxId: 213804]}  ali model 3D-neighbors follow..  11  189................................................................................................................................................................................................................................................................................................................NDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSG..... 242

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.