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Query: IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSVTHCDSLWFGADIITMRGGNYQLIPQGAIAVTGDKIVWIGPHAELPPIHAARQVVYEGGLITPGLIDCHTHLVFGDDRSNEFEQRLNGVSYAEIAANGGGIISTVRATRQASEQQLLEQALFRLKPLLAEGVTTIEIKSGYGLNLESEIKMLRVARRLGELLPIDVKTTCLAAHALPPEFIGQPDDYIDVVCNSIIPQVAVENLADAVDAFCEHLAFSPAQVERVFLAAQKAGLPVKLHAEQLSALRGATLAAKFHAISADHLEYATESDVQAMANAGTVAVLLPGAYYLLRETQCPPIDLFRQYKVPMALASDANPGTSPVLSLRLMLNMACTLFRMTPEEALAGVTCHAAQALGVQQTQGTLETGKLANWVHWPLSHPAELAYWLGGQLPATVVFRGEVRPLast
1 -80.500d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  59  1.................................................................PALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAELAASYNALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGT........................................ 301
2 -57.500d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  1..................................................................ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIE----------DRLTEKMAYYGTILAQMEMARHGIAGFVDMYFHEEWIAKAVRDFGMRALLTRGLV---------------DSNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETKEEYDLEDILNIGLKIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIA-PVQRMIEHGMKVTLGTDG-AASNNSLNLFFEMRLASLLQKLDVNTCLKMVTYDGAQAMGFKS............................................ 280
3 -54.300d4aqla2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1.................................................................PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRF---------QNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDLADITDKFGQRAFVGKVCMDTTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLM-----------------GELGNIAKTRDLHIQSHISENSYKNYTSVYDKNNLLVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFL-NVLEVLKHEVKIGLGTDV--AGGYSYSMLDAIRRAVMVSNLTLKEVFRLATLGGSQALGLDGEIGN........................................ 313
4 -51.000d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  15  1.................................................................PAWVNTHHHLFQSLLKGEGLDATLTPWLAATPYRFR----------ALFDERRFRLAARIGLIELARSGCATVADHNYV-AILFEEAEKLGLRFVLLRGGATQTRQLEADLTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHSHLSETYGKSPVAFCGEHDWLWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRLGSGIC-PVREMADAGVPVSIGVDG-AASNEAADMISEVHMTWLAQRASIAEVIHWGTAGGARVMGLDE-VGK........................................ 336
5 -48.800d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}  ali model 3D-neighbors follow..  15  1.................................................................PGFIDGHIHLPQTRVLGAYGE-QLLPWLQKSIYPEEIKY---------KDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVLFEEASRRNMRVIAGLTGIDTPENFYRDSKRLIAQYHD--KGRNLYAITPRFAFGASPELLKACQRLKH------EHPDCWVNTHISENPAECSGVLVEHPQDYLGVYEKFDLVSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLGSGLF-RLGRATEHRVKMSFGTDVGGGNR--FSMISVLDDAYKVGMLSPYRGFWSVTLGGAEGLYIDDKLGN........................................ 325
6 -48.700d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  13  1.................................................................PPPVNAHTHLDMSAYEFQALP--YFQWIPEVVIRG--------------RHLRGVAAAQAGADTLTRLGAGGVGDIVWAPEVMDALLAREDLSGTLYFEVPDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLM-----------------RLLSDYAAGEGLPLQIHVAEHPDLTPVRYLDELGVLTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHLECGT-FDWPAFAAAGVEVALGTDS-VASGETLNVREEVTFARQLYPLDPRVLVRAAVKGGQRVVGGRT............................................ 307
7 -39.800d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  24  2.............................................................................................................................................................................................................................................................................................................CERVWLNVTPATLRSDL--ADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL-VTXLRVGMLADFLVWNCGHPAELSYLIGVDQLVSRVVNGEE.. 101
8 -37.600d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  1.................................................................P-FVEPHIHLDTTQTAGQPNWNQSGTLF--------EGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALR----------LGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVET--ARVTASHTTAMHSRLFRLLKMSGINFVANPLVNIHLQGR-ITRVKEMLESGINVCFGHDGVFDPLGTANMLQVLHMGLHVCQLQINDGLNLITHHSARTLNLQD--YGIAAGNSAN................................ 320
9 -35.100d2vhla1 b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6-phosphate deacetylase, NagA {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  2.......SLLIKDIAIVTEN----EVIKNGYVGINDGKISTVSTERPKEPY-SKEIQAPADSVLLPXSVTVGKDADLVIVSSDCEVILTICRGNIAFISKEA................................................................................................................................................................................................................................................................................................................ 91
10 -31.600d2imra1 b.92.1.11 (A:34-90,A:399-418) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  19  1.....HTPRLLTCDVLYTGMGG---AQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAXFLRRGETWQEGFRWELSRD................................................................................................................................................................................................................................................................................................................................. 77
11 -29.200d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  12  4...............................................................................................................................................................................................................................................................................................................DTILINIG-QLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYESGRLVTXLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTI.. 110
12 -28.200d4aqla1 b.92.1.4 (A:9-75,A:389-450) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  7  2.....................................................................................................................................................................................................................................................................................................................AHIFRGTFVHSTWT--CPMEVLRDHLLGVSDQEKLAKEWCFKPCEIRELSHHEFFMXFEVGKEFDAILINPKAIQKFLYLGDDRNIEEVYVGGKQ.. 126
13 -26.500d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  12  6.................................................................................................................................................................................................................................................................................................................................RNAAAIMTGGRGTADDPSRVTIDAIGALAPRPGETIVDATDVIYXVAVGYAADIAVYRLDDPRGPVASGGRPSVMALFSAGKR.. 108
14 -25.200d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  20  1......ATALWRNAQLATLNPAMIGAVENAVIAVRNGRIAFAGPESDLPDDTADETTDCGGRWITXLEAGKSADFAWDIERPAELVYRIGFNPLHARIFKGQKV.............................................................................................................................................................................................................................................................................................................. 103
15 -25.200d2ooda1 b.92.1.4 (A:4-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}  ali model 3D-neighbors follow..  12  6...................................................................................................................................................................................................................................................................................................................RGTFFDFVDD--PWKHIGNEQAAARFHQDGLMAFGPYEKIAAAHPGVEITHIKDRIIVXFEPGKEADFVALDPNGLFAVMMVGDDRCVDETWVMGKR.. 135
16 -23.700d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  15....................................................................................................................................................................................................................................................................................................................................................EPFWGAVEIENGTIKRVLQGEVMPXKIEEGWNADLVVIDLDLPNHLVHAFSG-EVFATMVAGKW.. 97
17 -23.700d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}  ali model 3D-neighbors follow..  15  3.............................................................................................................................................................................................................................................................................................................VEPFALAHATIVTGDKAG-------TILRNMTIVVGADGRIEQVAPSIETSEYHYLDGTGKIVMXLEVGKSADLLVLNANPLDDL---RALEHPALVIAAGHP.. 98
18 -23.500d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}  ali model 3D-neighbors follow..  16  1.................................................................PGLINAHTHLFSQGKPLNP-----------KLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLAIPEGHG-PEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHA---QSPEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNASALIPTLSANVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAYAGFSPAEALHAATAVNASILGVDAETGS........................................ 324
19 -23.500d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}  ali model 3D-neighbors follow..  5  4........................................................................................................................................................................................................................................................................................................................IFKGNLIFTKT--SDKFTIMKDSYIVVIIASVSSNLPDKYKGNPIIDFRNNIIXFEEGYDFDALVINDSNLERFIYLGDDRNIMKRYVCGNE.. 108
20 -23.300d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}  ali model 3D-neighbors follow..  11  1..................................................................GGIDTHVHF----------------------------------------------INPDQVDVALANGITTLFGGGTGPAEGSKATTV----GPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLK----------IHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEMAMAGHPNVLPSSTN--PTRPFTVNTSMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNG-SDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADXGDLIHDTNITF---MSKSSIQQGVPAK.... 328
21 -23.300d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  2........YALTQGRIFTGH----EFLDDHAVVIADGLIKSVCPVAELPP--EIEQRSLNGAILSPXTLAAGKVANL......................................................................................................................................................................................................................................................................................................................................... 64
22 -22.900d3be7a1 b.92.1.9 (A:3-56,A:360-398) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}  ali model 3D-neighbors follow..  11  1....................................................................................................................................................................................................................................................................................................................SEDFLIKSKGYLDIQTGEIIKADLLIRNGKIEIGKINTKDATVISIPDLILIP---XQIKEGFDADIVGVIENPLANI---RTLEEVAFVMKEGKV.. 91
23 -22.100d1po9a1 b.92.1.7 (A:1-62,A:347-388) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2IDYTAAGFTLLQGAHLYAPEDRGI-----CDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPXEILPGNDA........................................................................................................................................................................................................................................................................................................................................... 71
24 -19.900d3mkva2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}  ali model 3D-neighbors follow..  16  1..................................................................GLIDLHVHVVAIE--------------------------FNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFKQAVESGLVEG---RLFVSGRALSQTGGHA-VDEVRRAVREELQM--ADQIKIMASGGVASPTDPV-GVFGYSEDEIRAIVAEAQGRGTYVLAHA---YTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVV--PTKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRL----QSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLG......................................... 311
25 -19.200d2qs8a1 b.92.1.9 (A:7-63,A:374-410) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}  ali model 3D-neighbors follow..  9  1.............................................................................................................................................................................................................................................................................................................SKTLIHAGKLIDGKSD-QVQSRISIVIDGNI-ISDIKKGFISSNDFEDYI----DLRDHTVLPXSIESGKLADLIAVKGNPIEDI---SVLENVDVVIKDGLLY. 95
26 -19.000d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  12  1..................................................................GWIDDHVHCFEKMALYYDYPDEI----------------------------------------GVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQI--QQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGIDFAWQAYNKGVVFDIGHGTDSFNFHVAETALREGMKAASISTDIYIRNGPVYDLATTMEKL-RVVGYDWPEIIEKVTKAPAENFHLTQK-G......................................... 267
27 -19.000d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  1........MIVEKVLIVDPIDGEFT----GDVEIEEGKIVKVE-----------KRECIPRGVLMPXRIAEGTR............................................................................................................................................................................................................................................................................................................................................ 51
28 -18.600d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}  ali model 3D-neighbors follow..  17  1..................................................................GLMDMHVHFGQEYQ-------------------------SKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGKTATTGGHA-PYEVYAAVRQRYKDGADGI--KITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHA---HGAEGMKRAIKAGVDSIEHGTFMDLEAMDLMIENGTYYV--PTISASVGPQISDTFRKAYEKGVKIAFGTDVQKHGTNWKEFVYMVENG-----MPAMKAIQSATMETAKLLRIEDKLG......................................... 310
29 -16.100d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]}  ali model 3D-neighbors follow..  23  63..TENVLDLLLTNALILDYTG-----IYKADIGVKDGYIVGIGKTPNMIVGTATEVIAAEGKIVTAXLVLWEPKF........................................................................................................................................................................................................................................................................................................................................... 140
30 -14.800d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  9  422.......................................................................................................................................................................................................................YYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAAT--LTCHSIAHGINLRKSPQYLYYLAQIGLAMSPLSNNSLFLDYHRPFPVFFLRGLNVSLSTDDPL-HLTKEPLVEEYSIAASVWKLSACDLCEIA-RNSVYQSGFSHAIGKDYYKRGPDIHKTNVPHIR-VEFRDTIWKEEMQQVSDEVVP 628
31 -14.700d3mkva1 b.92.1.9 (A:1-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}  ali model 3D-neighbors follow..  9  1.............................................................................................................................................................................................................................................................................................................LTTFLFRNGALLDPDHPDLLQGFEI---------LIEDGFIREVSDKPIKSSNAHVIDVKGKTXRIVPGAHADVLVVDGNPLKSVCLLGQGEHIPLVMKDGRL.. 98
32 -14.400d1po9a2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1..................................................................GFIDQHVHLIGGGG----------------------------------EAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWM------------LTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAAE--------------SRVGGLLGGKPGVTVFHMGDSKKA-YDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGRVTLSSDGNGSQAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGK-G......................................... 284
33 -14.200d3rysa_ c.1.9.0 (A:) automated matches {Arthrobacter aurescens [TaxId: 290340]}  ali model 3D-neighbors follow..  13  6................................................................PP--AELHLHIIFALAERNGIELPYEDIEELREKYEFTDLQSFLDLYYANTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFLRDMSEDSALEVLDQLLAM---HAPIAGIGLDSAEVGNPPSKFERLYQRAAEAGLRRIAHAGEEGPASYIEALDVLHVERIDHGIRCMEDTVQRLVAEQVPLTVCPLSNVRLRA----PLPEMLAIGLNVCVNSDDPAYFGG--YVDDNFEQLVKVLEFSVPE-QATLAANSIRSSFASDA........................................... 316
34 -14.000d2z26a_ c.1.9.4 (A:) Dihydroorotase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2...........................................................SQVLKIRRPDDWHLH------------LRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDLAATITPQHLMFNRNHM-LVGGVRPHLYCLP---LKRNIHQQALRELVASGFNRVFLGTDSAPHARHNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPV----------NDTFIELVREEQQV-------AESIALTDDTLVP 332
35 -13.600d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}  ali model 3D-neighbors follow..  23  4.......DLIIKNGIICTASDIYA-----AEIAVNNGKVQLIAA--SIDPSLGSEVIDAEGAFITPXILPGVSDA........................................................................................................................................................................................................................................................................................................................................... 64
36 -13.500d3pnua1 c.1.9.0 (A:1-335) automated matches {Campylobacter jejuni [TaxId: 192222]}  ali model 3D-neighbors follow..  10  1..............................................................MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLV---------HGETNDFVMDRESNFAKIYEKLAKHFPRLKIV--------------------------------EHITTKTLCELLKDYENLYATITLHHLIITLDDV-IGGKMNPHLFCKP---AKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTAPVILPVLAELFKQNSSEENLQKFLSDNTCKIYDLKFK---------EDKILTLEEKEWQV-------PNVYEDKYNQVVP 322
37 -13.000d3iara1 c.1.9.1 (A:5-363) Adenosine deaminase (ADA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  5................................................................KP--VELHVHLDGSIKPETILYYGRRRGIALPANTAEGAKFDYYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKV--IDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVEAVDILKTERLGHGYHTLEDQYNRLRQENMHFEICPWSSYLTGA----AVIRLKNDQANYSLNTDDPLIFKS--TLDTDYQMTKRDMGFTEEE-FKRLNINAAKSSFLPED........................................... 334
38 -12.900d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}  ali model 3D-neighbors follow..  23  1.......PLLIKNGEIITADS-----RYKADIYAEGETITRIG--QNLEAPPGTEVIDATGKYVFPGXADLVVY............................................................................................................................................................................................................................................................................................................................................ 60
39 -12.700d2pgfa_ c.1.9.1 (A:) automated matches {Plasmodium vivax [TaxId: 5855]}  ali model 3D-neighbors follow..  11  32................................................................IP--CELHCHLDLCFSADFFVSCIRKYNLFVEKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMFKYNLDIELIHQAIVKGIKEVVELLDHKIHVALMCIGDTGHEAANIKASADFCLKHKADFVGFDHG----------------------EVDLKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNAIQVLKVERIGHGIRVAESQIDMVKEKNILLEVCPISNVLLKN----PIRQLYDAGVKVSVNSDDPGMFLT--NINDDYEELYTHLNFTLED-FMKMNEWALEKSFMDSN........................................... 349
40 -12.100d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}  ali model 3D-neighbors follow..  13  1...................................................................FIDPHVHIYLPFMATFAKD----THETGSKAALMGGTTTYIEMCCPSRNDDALEGTEGQLREIVADGISSFKIFLSYNFFGVDDGEMYQTLRLAKE------LGVIVTAHCENAELVGRLQQKL----------LSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVHLSCKPALDAAMAAKARGV-SVIPHFLLDKTYAERGGVEAMKYIMSPPLR---DKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVG--SD................................ 335
41 -11.800d1rk6a1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}  ali model 3D-neighbors follow..  24  3.......DYILSGGTVIDGTNAP-----LADVGVRGDRIAAVG---DLSASSARRRIDVAGKVVSP.................................................................................................................................................................................................................................................................................................................................................... 55
42 -11.200d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}  ali model 3D-neighbors follow..  20  3.......DVIVKNCRLVSSDG-----ITEADILVKDGKVAAI--SADTSDVEASRTIDAGGKFVMPXTLQVGSDA........................................................................................................................................................................................................................................................................................................................................... 63
43 -11.100d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  11  1................................................................................................................................................................................................................................................................................................................MLKLIVKNGYVIDPSQNLEGEFDILVE---NGKIKKIDKNILVPEAEIIDAKGLIVCP--XTLKLGSPADITIFDPNKEWILNEETNLSKVIYTIKDGKM.. 109
44 -10.900d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}  ali model 3D-neighbors follow..  18  1..................................................................GGIDVHTHVETVSFNTQSAD----TFATATVAAACGGTTTIVDFCQQDRGHSLAEAVIEELEVLPDLGITSFKVFMAYGMNMIDDVTLLKTLDKAVK------TGSLVMVHAENGDAADYLRDKF----------VAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIHVTCEESLEEVMRAKSRGV-TCTHYLYLTKEDLERPDFEGAKYVFTPPAR---AKKDHDVLWNALRNGVFETVSSDHCSGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGT........................................ 330
45 -10.400d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  10  8............................................................................................................................................................................................................................................................................................................................NGQTVNGMPVEIAIKEKKIAAV-AATISGSAKETIHLEPGTYV---SAXTLEIGKDADLTIFTIQAEEKTLTDSNGLTRVKTIIGGQI.. 99
46 -10.200d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Slime mold (Dictyostelium discoideum) [TaxId: 44689]}  ali model 3D-neighbors follow..  10  1.................................................................PGGIDTHTHFQLPFMGTVSVD----DFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQELSRPEALEAEATNRAIVIADSVCTPVYIHVQSIGAADVICKHRKEGV-PIAAGLGVDGSHMW--RHAAAFVMGPP---IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGR........................................ 334
47 -9.870d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}  ali model 3D-neighbors follow..  14  1..................................................................GVVDEHVHIIDMDLKNRYGRFELDSES-----AAVGGITTIIEMPITFPPTTGVPGNLPEIRKMHDAGAVGF--KSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQI----------KAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVHVSNPDGVELIHQAQSEGQ-SGPQYLNITTDDAE---RIGPYMKVAPPVR---SAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKELPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKG......................................... 325
48 -9.590d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  8  6...............................................................................................................................................................................................................................................................................................................................RGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEAGRMVIXIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEG.... 89
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.