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Query: IDP04465 hypothetical protein [Yersinia pestis CO92] YPO1994 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSLENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPRLast
1 -27.600d2gm6a_ b.82.1.19 (A:) automated matches {Cupriavidus necator [TaxId: 264198]}  ali model 3D-neighbors follow..  17  4.............PLREFITGLSALL-----DEQPGEARILREGGALLARLVARDDWLPDAFAQP--------HPEYYQQMLLHCDSAERFSIVSFVWGPGQR---------TPIHDHTVWGLIGMLRGA-EYSQPFVLD--------GSGRPVLHGEPTRLEPGHVEAVSPTGDIHRVHNADRVSISIHVYGANIGGVRRSVYTEAGER.......................................................................................................... 172
2 -24.500d1te4a_ a.118.1.16 (A:) MTH187 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  14  1.............................................................................................................................................................................................................................MADENKWVRRDVSTALSRMGDEAFEPLLE--SLSNEDWRIRGAAAWIIGNFQDERAVEP-----LIKLLEDDSGFVRSGAARSLEQIGGERVRA. 87
3 -21.800d4ieua_ b.82.1.19 (A:) Cysteine dioxygenase type I {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  1.......ELLKPRTLADLIRILHELFA--------GDEVNVEEVQAVLEAYESNPAEWALYA----------KFDQYRYTRNLVDQGNGKFNLMILCWGEGHG---------SSIHDHTSHCFLKLLQGNLKETLFDWPD--------KKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKV...................................................................................................... 173
4 -19.400d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  12  32...........................................................................................................................................................................................................................ISRFNRLFGVMAEIADELKARDGD-QRTALLSL-FEYPNMQVRLQAAKLTLAVAPVKA-----REQLEAIVSSKWFPQAGDAGMCLDLLDDGTFKPK 121
5 -17.700d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  124....................................................................................................................................................................................................................KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINL-LKDPNGDVRNWAAFAININK---YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLS. 222
6 -15.000d4adya1 a.118.1.28 (A:309-753) Proteasome regulatory subunit Rpn2, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  253..............................................................................................................................................................................................................GTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI-DVLDPLTKDPVDFVRQAAMIALSMILIQQT... 360
7 -11.100d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  308FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL-PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL----MAWLVDHVYAIREAATSNLK-----------KLVEKFGKEWAHATI-------------------------IPKVLAMSGDPNYLHRMTTLFCINVLSEKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS....... 586
8 -9.580d2jkrb_ a.118.1.10 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  44.........................................................................................................................................................VNCMQTDNLELKKLVYLYLMN--YAKSQPDMAIMAVNSFVKD--------------------------CEDPNPLIRALAVRTMGCIRVDKITEYLLRKCLKDEDPYVRKTAAVCVAKLNAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP... 181
9 -9.520d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  10  147.............................................................................................................................................................................................................................MRDEDRQVRKLVAKRLP-------EESLGLMT-QDPEPEVRRIVASRLRG---RLAAVEHASLEALRELDEPDPEVRLAIAGRL........... 233
10 -9.100d5o9zv_ a.118.1.2 (v:) Splicing factor 3B subunit 1, HEAT repeats {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  112..............................................................................................................................................................................................................KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCARSLVEIIEHGLVDEQQKVRTISALAIAALAE...... 224
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.