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Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -12.200d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}  ali model 3D-neighbors follow..  12  1................................................................KEQLASMNAIANVKATYSINGETFQIPSSDIMSWLTYNDG--------------------------------KVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPIVQGG................................................................................................................................................................................................................ 116
2 -6.120d1n62a1 a.56.1.1 (A:82-163) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}  ali model 3D-neighbors follow..  15  1............................................................................................................................................................................................................................................APDGTLSALQEGFRMMHGLYCTPGMIMRSHRLLQENPSPT---------EAEIRFGIGGNLCRC--TGYQNIVKAIQYAAAKIN................................................................................................... 76
3 -6.090d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  4..................................................................................................................................................................................................................................................................PSEEAFKGRGVSACATSDG-----FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHT----------------NRTLEEVTGDQMGVTGVRLRDTQNSDN............................... 112
4 -5.890d3eubs2 a.56.1.1 (S:93-163) automated matches {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  20  1............................................................................................................................................................................................................................................STKTRLHPVQERIAKSHGSFCTPGIVMSMYTLL---------RNQPEPTVEEIEDAFQGNLCRC--TGYRPILQG............................................................................................................ 67
5 -5.850d3ag7a1 a.2.3.0 (A:551-650) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  14  1................................................................................................................................................................................................................................EEIKNIDAKIRKWSSGKSGNIRSLLSTLQ-YILWSGKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQMAEKVFELLQEA............................................................................................................ 91
6 -5.580d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  7..................................................................................................................................................................................................................................................................PGEDQYRTKGVTYCPHCDG-----PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF-------------APEMKADQVLQDKLRSLKNVDIILNAQTT------EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG.................. 125
7 -5.360d2pg9a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}  ali model 3D-neighbors follow..  11  5..........................................................................................................................................................................ECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLL------EGLSTDIYTPLLRQLK-------EASQDLQAVAKSSG---------------AGGGDCGIAKTLKNRWADLGIELLY...................................................................................................... 131
8 -5.350d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  3.....................................................................................................................................................................................................................PLTPEQTHAYLHHIGDDPGPPSLANLDRLIDAHLRRVAFENLDVLLDRPIEIDAD----------------VFAKVVEGSRGGYCFELNSLFARLLLA-------------LGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLVDVGFGSANPPRALPLPGDEADAGQVHCVRLVDPHAGLYESAVRGRSG....... 174
9 -5.250d1ne9a2 d.108.1.4 (A:165-335) Peptidyltransferase FemX {Weissella viridescens [TaxId: 1629]}  ali model 3D-neighbors follow..  13  2.............................................................................................................................................................................................................................................PSKTKSKIKRPFR--DGVEVHSGNS-EFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKLLSTGIALK-------------GRKIWYMYAGSMDGNTYYAPYAVQIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGEID-------VLDPEVYAELVK 170
10 -5.210d2pu3a_ d.4.1.6 (A:) automated matches {Vibrio salmonicida [TaxId: 316275]}  ali model 3D-neighbors follow..  13  96..................................................................................................................................................................................................................................................HNLVPAIGEVNGD-----SNFRFSQWNGSKGAFYGQCAFKVDFKGRVAAQSRGAIART-NNEYKFNLSKARQLMEAWNKQYPVSTWECTRDERI------AKIQGNHNQFV.................................................................. 203

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.