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Query: IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGKRHELast
1 -106.000d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  57  34FHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN............... 281
2 -47.000d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  19  43MVPFVFLGLEKRPYKRATSCQKCLRVNDGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVEDNFWQMGDVGPCGPSSEIYVD-LEIWNLVFMQYNRDTPLPHPNIDTGMGLERIASVLQGKNSNF......................................................................................................................... 236
3 -16.800d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  17  1...........................................................................................................................................................................EIDIIFPLIQFGEEVSGKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRLRRAMRFGYKLGIEDIMKEPYPELELSREFVKG 107
4 -7.460d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  108............PPFRIVVPGRVFR-FEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA--LFGPDSKVRFQPVYFPFVE-----PGAQFAVKWLELAGMVHPKVFQAVDAYRERLGLGLGVERLAMLRYGIPDI.......................................................................................................................... 248
5 -6.990d3smpa1 c.55.1.14 (A:233-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1.................................................................................................................RPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQ--EEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF--KFEEDFRMIADLQLHKLDEL.............. 132
6 -6.760d3ugua2 b.1.18.11 (A:183-360) automated matches {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  6  17.....................................................................................SDKPLRLAVSLYYHGEPIPVTVAVTNSTEKTVKKIKVL----VEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILV-------------SYQIKVKLTVSGLLGELTSSEVATEVPFR......... 172
7 -6.690d3mcqa2 d.139.1.0 (A:136-308) automated matches {Methylobacillus flagellatus [TaxId: 265072]}  ali model 3D-neighbors follow..  11  2..................................................................GASLLRSTARADDDIWVSGPLGDAALALAAIQGRYPLSDTELAACGKALHQPQPRVVLGQALRGLAHSALDISDGLLADLGHILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKMILSGGDDYE--TASTQHRQQIADIGRQLSLDMAVGRITDTQQ....................................... 161
8 -6.290d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  13  20.............................................................................................................................................................................KAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLE....................... 86
9 -6.240d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  17  49.................................................................................WNNETCDKYGPYWVIPLKESGCINVIVRDGTNKLIDSDLRVSFSDFTDRTVSVIAGNSAVYD........................................................................................................................ 131
10 -6.090d2qalt1 a.7.6.1 (T:2-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  20.............................................................................................................................................................................ASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA........................ 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.