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Query: IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKKFVYLLLLVLFMTVLPFQMLEAQAASTSWIEQELDGNEPFIAETEKILSKNRQDITLADLETIQKIHVFGADSIPNKISDYKNLTALEANYGTITEVPESVGSLKELVTLNVDENNLQEFPMVIFQLPKLEVLYISRGNITEIPTEITTLASHLKVLDVSNQKLVTIPDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEFYDNPTIDYLQKQDQLTYTGGTIEVPLNTDFKQLTPDKTNLGLKSNIPLFSQHEFMYYDDGTSANILTNGVATDVGDGYITIKSTLSTNSNPFAKVRVPIKVTAPLKGADVTVQYLDSNGDTLATPDILSGNEGDAYASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEEGKILTASDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPIKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYSIFGFITVCLSFVLFFRLKKQKNSLast
1 -35.500d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  9.VASHLEVNCDKRNLTALPPDL---KDTTILHLSENLATLMPYTRLTQLNLDRAELTKVDGTLPVLGTLDLNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLALRGLGELQELYLKGNELKTLPPGLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 205
2 -30.000d2o6qa_ c.10.2.0 (A:) automated matches {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  16  15.NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNSKAFHRLTKLRLLYLNDNKLQTIFKELKNLETLWVNKLQALPIGFDQLVNLAELRLDRNQLKSLPPVFDSLTKLTYLSLGYNELQSLPKVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGFDSLEKLKMLQLQEN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
3 -29.600d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  30IPAASQRIFLHGNRISHVPAAFRACRNLTILWLHSNAAAFTGLALLEQLDLSDNAQLRSVHGLGRLHTLHLCGLQELGPGFRGLAALQYLYLQDNALQALPDTFRDLGNLTHLFLHGNRISSVPEAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTELAPLRALQYLRLNDN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 235
4 -29.600d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  13  36LDRQAHELELNNLGLSSLPELPPHLESLSCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLG-VSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT---PDLPPSLEALNVRDNYLTDLPELPQSLTFL--------DVSENIFSGLSELPPNLYYLNASSNEIRSLCD------LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR........................................................................................................................................................................................................................................................................................ 350
5 -29.400d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {French bean (Phaseolus vulgaris) [TaxId: 3885]}  ali model 3D-neighbors follow..  16  49.TYRVNNLDLSGLNLPPIPSSLANLPYLNFLYIGGINN--------------VGPIPPAIAKLTQLHYLYITHTNAIPDFLSQIKTLVTLDFSYNALSTLPPSISSLPNLVGITFDGNRISAIPDSYGSFSKLTSMTISRNRLTKIPPTFANL--NLAFVDLSRNMLEDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ............................................................................................................................................................................................................................................................................................................................................................................................. 286
6 -28.500d4rcab_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  13.IEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGN--SLTRLF------------PNEFANFYNAVSLHMNGLHEIVPGFLGLQLVKRLHINNNKIKSFRKTFLGLDDLEYLQADFNLLRDIPGAFQDLNKLEVLILNDNLISTLPANVFQYVP-ITHLDLRGNRLKTLPYELEQIPGIAEILLEDN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191
7 -27.800d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  16  78.LVKLERLYLSKNQLKELPEKM--PKTLQELRVHEN-SVFNGLNQMIVVELGTNPLKSAFQGMKKLSYIRITNITTIPQGL--PPSLTELHLDGNKITKVDASLKGLNNLAKLGLSFNSISAVDNSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSND.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 261
8 -26.200d4cnca_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  30LPAYVRNLFLTGNQLAVLPAGRPPLAELAALNLSGSAGAFEHLPSLRQLDLSHNPLADAFSGSNASVSAPSPLVELILNHI--PPEDERQNRSFEGMVVAALAGRALQGLRRLELASNHFLYLPRVLAQLPSLRHLDLSNNSLVSLTYVSFRNLTHLESLHLEDNALKVLHNGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 218
9 -25.700d2v9tb_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  14.....NIVDCRGKGLTEIPTNL---ETITEIRLEQN--TIKVIP------------PGAFSPYKKLRRIDLNQISELAPDFQGLRSLNSLVLYGNKITELPKLFEGLFSLQLLLLNANKINCLRVAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 165
10 -25.600d2v70a_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  11.....TTVDCSNQKLNKIPEHI---QYTAELRLNNN-------------EFTVLEATGIFKKLPQLRKINFNKITDIEEGFEGASGVNEILLTSNRLENVQHMFKGLESLKTLMLRSNRITCVGNSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 163
11 -25.300d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  14  18.LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTIEGVQYLNNLIGLELKDNQITAPLKNLTKITELELNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP-LANL-SKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVT.................................................................................................................................................................................................................................................................................................................................................................................................................................... 223
12 -25.100d1h6ta2 c.10.2.1 (A:36-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  16  18.FAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSVQGIQYLPNVTKLFLNGNKLTKPLANLKNLGWLFLNKVKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL-TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 205
13 -24.800d1o6va2 c.10.2.1 (A:36-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  15  18.LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLIDGVEYLNNLTQINFSNNQLTTPLKNLTKLVDILMNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISAPLANLTTLERLDISSNKVSDISV-LAKL-TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN----LKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDL-TPLANLTRIT........................................................................................................................................................................................................................................................................................ 373
14 -24.500d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  9...SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKGAFSGFGDLEKIEISQNDVLEVIENLPKLHEIRIEKANNLPEAFQNLPNLQYLLISNTGIKHLPDSFVGLSESVILWLNKNGIQEIHNAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYLENLKKLRARSTYNLKKL................................................................................................................................................................................................................................................................................................................................................................................................................................................... 238
15 -24.500d2wfha_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  10.....TVVRCSNKGLKVLPKGI--------------------------------------RDVTELY-LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNSFSNMTQLLTLILSYNRLRCIPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 136
16 -24.100d2xwtc_ c.10.2.0 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  27LPPSTQTLKLIETHLRTIPSHFSNLPNISRIYVSID-VTLQQLE------------SHSFYNLSKVTHIEIRNTRNLPDALKELPLLKFLGIFNTGLKMFPDAFQGLCNTLTLKLYNNGFTSVQGAFNGTKLDAVYLNKNKYLTVIDKAFGGVYSGPSLLDVSQTSVTALPSKLEHLKELIARNT......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 234
17 -23.800d3g39a_ c.10.2.0 (A:) automated matches {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}  ali model 3D-neighbors follow..  20  14...................................................................DCSGKSLASVPTGI---TTTQVLYLYDNQITKLEPVFDRLTQLTRLDLDNNQLTVLPAVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 120
18 -23.400d1ds9a_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  20  1....MAKATTIKDAIRIF-EERKSVVATEA-----------EKVELHGMIPPIEKMDATLSTLKACKHLALNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAAKLEDLLLAGNPLYN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 154
19 -22.100d1xeua1 c.10.2.0 (A:35-216) automated matches {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  23  18.LANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSLAGMQFFTNLKELHLSHNQISSPLKDLTKLEELSVNRLKNL-NGIPSA-CLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGG-LTRL-KKVNWIDLTGQ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 182
20 -20.600d4xsqa_ c.10.2.0 (A:) automated matches {Branchiostoma floridae [TaxId: 7739]}  ali model 3D-neighbors follow..  16  9............................................................VSLYGEMVVACMGLTEIPEDI---HRAVYLVLKDNNITKITSSFKGLRNLQGIDLSNNKINHISAALRHLGHLDDIDLSRNELTSVSEKLFDFQGRRFFVYLANNPWG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 125
21 -20.400d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  1.....RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHN------------------------------------RLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 120
22 -19.700d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  8..HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ---------------------------QHLQHLE-------LRDLRGLGELRNLTIVKSGLRFVPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 116
23 -19.300d1a9na_ c.10.2.4 (A:) Spliceosomal U2 small nuclear ribonucleoprotein A` / U2A` / Lea1 protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  2...................................................................KLTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDPLASLKSLTYLCILRN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 122
24 -19.200d5gmkb_ c.10.2.4 (b:) Spliceosomal U2 small nuclear ribonucleoprotein A` / U2A` / Lea1 protein {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}  ali model 3D-neighbors follow..  11  8...VIDAPQYYVDHFNGK-YNVDKCVILRDLQLETD----------------------SESMPSSLKHL--------------TKPTHILDLTNNDLIMI-PDLSRRDDIHTLLLGRNNIVEV-DGRLLPMNVQNLTLSNNSIRRFEDRLRRAPRTLKNLTLIGNQVCHLAN...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 139
25 -16.900d2ca6a_ c.10.1.2 (A:) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  11  93..PKLHTVRLSDNAFEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRMKEWAKTFQSHRLLHTVKMVQNGIRPLLEGLAYCQELKVLDLQDNTFTHLAIALKSWPNLRELGLNDCLLSAVVDAFSKLENGLQTLRLQYNEIEL......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 287
26 -14.700d4wp6a_ c.10.2.0 (A:) automated matches {Chaetomium thermophilum [TaxId: 759272]}  ali model 3D-neighbors follow..  16  2.......................................KQKLTSCLARRYNAEQKLLDLSALGTDETLSSLGSNEYKDPEQKNEAIQAVSLARNDILDVGQLAVTLPRLRRLDLSGNNLENISKWQQEFRFLEELHLTGNPVTTLPNYATEIKKWFPSLQLDGQQIRT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 157
27 -13.600d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  46..FRVQHMDLSNSVIEVLHGILSQCSKLQNLSLEGKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-HVSETITQLNLSGKNLQKLSTLVRRCPNLVHLDLSDVMLKN--QEFFQLNYLQHLSLSRYDIIPETLLELGEIPTLKTLQVPDGTLQLLKEALPHLQ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 252
28 -13.200d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  11  21.............................................................NINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDLIELIETSPSLRVLNVESNFLTPLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMESLLRVGISFASM........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 143
29 -12.700d2q4gw_ c.10.1.1 (W:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  26.LQQCQVVRLDDCGLTEISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-------KIQKLSCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDLCEGLLD-CRLEKLQLEYCSLSALASVLRAKPDFKELTVSNNDINELCQGLKDSPCQLEALKLESCGVTSLCGIVASKASLRELALGSN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 236
30 -12.500d3rw7a2 c.10.2.3 (A:203-362) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  2.........LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE--------------NIPELLSLNLSNNRLYRLSSIVQKAPNLKILNLSGNELKSE-RELDKIKKLEELWLDGNSLSTYISAIRERFPKLLRLD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 150
31 -11.500d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  13  1..................................NSTDVEETLKRIQNNDPDLEEV-----NLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDLAEMLKVNNTLKSLNVESNFISGLVEALQSNTSLIELRIDNQS-MEIANMLEK--TTLLKFGYHFTQQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 144
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.