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Query: IDP06042 hypothetical protein jhp0369 [Helicobacter pylori J99] NP_223088 [Helicobacter pylori J99], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGINMCSKKIRNLILCFGFILSLCAEENITKENMTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINANPYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLLLast
1 -27.800d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  13  1............................................................................................................EGASGFYVQADAAHAKAS---------SSLGSAKGFSPRISAGYR------INDLRFAVDYTR---YKNYKAPSTDFKLYSIGASAIYDFDTQSP----VKPYLGARLSLNR-ASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNV---RSGELSAGVRVKF 155
2 -27.000d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1...........................................................................................................APKDNTWYTGAKLGWSQYHDTGFINNNGPTHENK--LGAGAFGGYQ--VNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPI------TDDLDIYTRLGGMVWR-ADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQW-TNNIGDAHTIGTRPDNGMLSLGVSYRF 170
3 -24.200d3qraa_ f.4.1.0 (A:) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  10  2..............................................................................................................EGESSISIGYAQSRVK-------EDGYKLDKNPRGFNLKYRYE--FNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFRINEY----VSLYGLLGAGHGK-AKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYE----------SKLDDVKVGTWMLGAGYRF 157
4 -10.600d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  82...................................................................................GRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRDEHAEGSVNGTLMQLGALGGVNVPFAATEGGLRYFAE-KGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVFTGAT--------AATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYS---------YAGSKQYGNHSGRVGVGYRF 299
5 -9.600d5dl7a_ f.4.7.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 557600]}  ali model 3D-neighbors follow..  131.GIRFVSNEIPNLQLEGFYVDEVRQRDSIRYTDVGTDNINHRFNKAATTDSFSYQLKDYRLRAYHAELKDIYQQQFLGFNGKQPLNDQLNFLSDVRFFNSEETGSKKIGEVDNRHISGLFGLNY--------------------NHTVSLGYMQSFGSTGLPFLSGTESPVVLDFMSSDYSNKDEKVYSIRYE--YDFKNARIGDVSL----GLRFMTRYAKGEDIDLLQYGDQRFKEDSLEFDLGYKIPEGKLKGLGMRARFSHYRNDMPTNMTFHSANLNVDYTFKF 402
6 -9.540d2x55a1 f.4.4.0 (A:4-292) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  96......................................................................................................SSHPATNVNHANEYDLNVKGWLLQDEN--------------YKAGITAGYQET--TATGGSYSYNNGAYTGNFPKGVRVNQRFSMPYIGLAGQYRIN---ELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDNKNYTVTAGLQYRF 289
7 -8.990d2vdfa_ f.4.4.2 (A:) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  10  57..................................................................................................................IINLETD--ENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQL----GNGWYINPWSEVKFDLLNTGVTNLKKDINQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTSIREYGLRVGIKF 247
8 -8.480d3szva1 f.4.7.2 (A:1-384) OpdO porin (OccK3) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  131.GALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGGQRSLKSDLRFARA--SEDGGFRELDNRAFGALFSLRL--------------------AHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFG---------ALGL--GLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENR----LILSYSLAL 383
9 -8.300d5dl8a_ f.4.7.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 557600]}  ali model 3D-neighbors follow..  10  138.GTNLKSQLSDQLYAEIGRVEKVSPRNEEDFKKFSFTANGITKESDGL-NYIDLRYQFTPSLKGEYYFGNLEDLYNKHYVGLEHTWKQPTFALTSKFKYFNAKDDGNTFDIDAENIGLLETVKV--------------------NHTFGLGYQQIIGES-------ETYFINWNATGFFKEDEKSYHVMYGYDFKDYIP---------------GLNAMVKYVYGHDFKAANGEKNHETESNVILNYAFQQPLLKGFALQYIRIDYNVKHGND--FGEDRLFVNYTKKF 391
10 -7.890d3syba_ f.4.7.1 (A:) OpdP porin (OccD3) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  174.GFAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYL-KPLDGLEISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGH--------------------AHALTLAYQQVDGNEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRAQ--LGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQID-VNELRLVSTFPFNL 451

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.