current user: public

If you have questions about the server, please let us know.

Query: IDP06124 hypothetical protein jhp0592 [Helicobacter pylori J99] NP_223310 [Helicobacter pylori J99], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MGNLTYYAYMYLILFVCLLPVLLVGLAWRLTRPPLKQNIPNKSLSLENLNEQIKNLQSVPALEKLKNRFNERFKICPKDKETLWLETIQNLVASEFFELEDAINFGQELENANPNYRQKIANATGLALKNKKEKGLast
1 -6.640d1p16a1 b.40.4.6 (A:246-390) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}  ali model 3D-neighbors follow..  14  90..........................YWEMLRFRNDKSNGNHISVVEKILVSIKDGVKEKEVIEWCPKISRAWKKRENDRRQ..................................................... 145
2 -6.530d2j9wa1 a.24.28.0 (A:123-220) automated matches {African clawed frog (Xenopus laevis) [TaxId: 8355]}  ali model 3D-neighbors follow..  20  1.GNLNRCIADIVSLFITVMDKL------RLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQ----------------WLQKLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLH.............. 98
3 -6.260d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}  ali model 3D-neighbors follow..  20  50..........................TWKYIQGRSDKNQANDRLTYEKTLLNIEENITIDELLDLF..................................................................... 89
4 -5.560d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12LEQRSLILTAFGLMLIVVIPAILVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPS......................................................... 91
5 -5.400d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}  ali model 3D-neighbors follow..  12  26.AMLTSYAVTVMFIY------YLLVTRQVLWVDPWSLPHPAHLPRYPDFSPL--YDCDPTELGRLLHGFFIFYA-----HHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLV 146
6 -5.370d2c61a2 a.69.1.0 (A:351-457) automated matches {Methanosarcina mazei [TaxId: 192952]}  ali model 3D-neighbors follow..  11  1................................................MNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG........ 79
7 -5.230d1h03p1 g.18.1.1 (P:5-66) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  20......ILFGATISFSCNTGYKLFGVQWSDPLPECRE.................................................................................................. 62
8 -5.210d3erba2 g.18.1.0 (A:68-128) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  14TPRLGSYPVGGNVSFECEDGFILRGSPWDGETAVCDN.................................................................................................. 59
9 -5.130d3ok8a_ a.238.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  29....................LVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVV--DLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKR. 146
10 -5.100d3f0pa2 d.357.1.2 (A:81-208) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  7IDDRRLYAW-------CALDTLIFPAL-AATGAPVSLTVSPSEIQAVEPAGMAVSLVLPQEAADVRQSFCCHVHFFASVPTEDWASKHQGLEGLAIVSVHEAFGLGQEF.......................... 119

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.