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Query: IDP06216 hypothetical protein HP0408 [Helicobacter pylori 26695] NP_207206 [Helicobacter pylori 26695], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNIFQTSLKCCVGLVLSVGVLLGDSKAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFVITKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCSKGGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQKLast
1 -5.820d4oxxa_ c.23.5.0 (A:) automated matches {Citrobacter braakii [TaxId: 57706]}  ali model 3D-neighbors follow..  12  1...........MNALILYGTETGNAEACA------------TTISQVLADTVDTKVHDLADMTPRAMLDSGADLIVFATATYGEGEFAGGGAAFFETLRETKPDLSGLRFAVFGTTFNQAGATAATILASL............................... 114
2 -5.740d3qe2a1 c.23.5.0 (A:69-239) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  15.............IIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNAL---------VFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVF-EHFNAMGKYVDKRLEQLITWREQFWLAVCEHFGVE............. 169
3 -5.720d2m6sa_ c.23.5.0 (A:) automated matches {Escherichia coli [TaxId: 469008]}  ali model 3D-neighbors follow..  12  4.............IGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPE---------LSDWLPYQDKYV----LVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIAVNFCNGGKQFDALLQEQ............................... 114
4 -5.510d2hnba_ c.23.5.0 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  4.............ITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH---------------GPLLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGDTFCGAIDKLEAELKNS............................... 112
5 -5.460d2jrta1 a.4.12.0 (A:1-92) automated matches {Rhodobacter sphaeroides [TaxId: 1063]}  ali model 3D-neighbors follow..  17  34....................................................................................................VASRKAAVVKAVIHGLITEREALDRYSLEEFALWRSAVAAHGEKALKVTMIQKYRQ...... 91
6 -5.400d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  43..................GIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDRTQGLSKLWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ........................ 168
7 -5.360d5b3ka_ c.23.5.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}  ali model 3D-neighbors follow..  11  1...........MKVAILSGSVYGTAEEVARHAQKLLS---------------AAGLEASHLPRASLDELKAFAPEAFLVVTSTTGELPDNLQPLYYAIRDQLPAWHGLPGGVIGDTFAGGGEQVRELFGEL............................... 114
8 -5.080d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}  ali model 3D-neighbors follow..  8............................................NRNFDAETFQTSLDVVAGKTHFDYADMNEIRLQRESLSNELD-FPGWFTESKPI--QNVESGFIFALVSDFNLPDNDENPLVRIDWWKYWFTNESFPYHLGWH............... 107
9 -5.000d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste dyscritum) [TaxId: 6436]}  ali model 3D-neighbors follow..  11  16...........................................TFYTIIDDEHKTLFNGILLLSQADNADHLN---------ELRRCTGKHFLNEQQLMQASQYAGYAEHKKAHDDFIHKLDTWDGDVTYAKNWLVNHIKTIDFKYR............... 110
10 -4.900d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  216.HVSDELFATIGVTFFGAGLIQRPQLRNLLHEKPELIPAGVEEL-LRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPNPTSHLAFG--GQHFCPGSALGRRHAQIGIEALLKKMPGV.................... 368

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.