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Query: IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTGVRGDNAPDPSLLAQLTQNANSASAASTGKNGQVAGAKQENVDASFEDLLQDAQGTGGSKKATANQTSKSGKSEKAQASSGTSTTTSVAQASQTATAQAVHGARDSGFNSDGSATLPSPTGTEVNGVVLRKGMGTLALMGLIMTLLAQASAKSWSSSFQQQNQAIQNQVAMAPEIGNAIRTQANHQAQATELQAQQSLISGITNIVGFAVSVGGGILSASKSLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAATKLTQNMAESASKTLSQTASKSAGGLFGQALNTPSWSEKVSRGMNVVKTQGTRAAKFAGRALSSAMNISQMVHGLTAGIDGIVGGVIGAQVAQEQRMAGMAEARAEELKSLNSVQAQYASQAQQLQEQSQQSFNSALQTLQSISDSALQTTASMFNLast
1 -4.590d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  2....................................................................................................................................KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQ........................................................................................................................................... 163
2 -4.540d1jp4a_ e.7.1.1 (A:) PIPase {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  4................................................LMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSR------------KFPK------------------------LTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDVDGTKEYTEGLLD---VTVLIG--IAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKA-GCKKWD--TCAPEVILHAVGGKLTDIHGNPLQYDKEVKHM-AGVLAA.............................................................................. 283
3 -4.400d1us6a_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  19  1.................................................................................................................................VELRPLIGLTRGL---ITIDAIRTHRRLVEKADELFQALPETYKTGQACGGPQ--HIRYIEASIEMHAQMSALNTLYSILGFIPKV................................................................................................................................................................................................................................ 88
4 -4.380d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2..................................................................................................................................................PITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQ---------------------VAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINK........................................................................................................................... 156
5 -4.010d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1..........................................................................................................................EVFPENGWKLYDPLLEYRRQGI--------PNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLS----------ESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILDKVESGKTSVVVHSSDGWDRTAQLTSLAMLM---LDGYYRTIRGFEVLVEKEWLSFGHDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTF. 322
6 -3.990d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}  ali model 3D-neighbors follow..  8  1.........................................................................................................PVTINNFNYNDP---------IDNNNI-----------IMMEPPFARGTGRYYKAFK-----ITDRIWIIPERYTFGYKPEDFNKSSGIFNRDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALI------LMHELIHVLHGLYGIKVDDLPIVPNEMQSTDAIQAEELYTFGDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLVCISDPNINI.. 316
7 -3.990d1yjga_ a.24.12.0 (A:) automated matches {Borrelia turicatae [TaxId: 142]}  ali model 3D-neighbors follow..  14  7.............................................................................................................................................................AVAFAKSVKDVHTLVKSIDELAKAIGKKIGANGLETDADKNAKLISGAYSVISAVDTKLASLEKKVGISDDLKGKITTVKNASTS---SKTADLGKDDVKDADAKTAIDIADTGAKDKGAEELIKLNTAIDALLTSAEAAVTAAINA....................................................................................................................................... 156
8 -3.930d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}  ali model 3D-neighbors follow..  7  26..........PDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFE......................................................................................................................................................................................................................................................................................................................... 141
9 -3.780d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  6  1...............................................................................................................................................................................................................................................................................................................................DKIIVMGGKNALVDDAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPKQVEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRL.. 124
10 -3.780d5eq7a_ e.7.1.0 (A:) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  12  8................................................................................................................................................VANKAANAAGDVIRKYFRKNNFDIIHKNDLSPAMVSVILDNFPSHAVYGEEKGWRC-IDGTKSFI-FGTLIA--LLQNGTPILGIIDQPVLKERWIGITGKRTTLNGQEVSTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRDKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGSGGVITDWKGHQLR............................................................................................. 233
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.