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Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -110.000d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  60  1...............................MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENV----KYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLV--EKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN............ 281
2 -49.600d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  1..............................SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVFLGLEKRPYKRATSCQKCLRVNDLEQVGYTSRMLGNFSFGDYFK----KEAIEYAWEFVTEVLKLPKEKLYVEDNFWQMGDVGPCGPSSEIYVD-LEIWNLVFMQYNRDTPLPHPNIDTGMGLERIASVLQGKNSNF............................................................................................................................ 236
3 -13.600d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  16  3..................................................................................................................................................................................................................................................DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRLRRAMRFGYKLGIEN............... 77
4 -7.350d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  3.................DVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIYMVAHTPPFRIVVPGRVFRFEDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDS-----KVRFQPVYFPFVE-----PGAQFAVKWLELAGMVHPKVFQAVDAYRERLGLGLGVERLAMLRYGIPDI-RYFFGGRLKFLEQFKGV........................................................................................................... 265
5 -6.910d3qsda_ d.3.1.0 (A:) automated matches {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}  ali model 3D-neighbors follow..  12  28..GSCWAFGAVEA--MSDRSCIQSGGKQNVELSAVDLLSPAWDYWVKEGIVTGSSKENHAGCEPYP-HHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKY-------------------------GPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPY---IANSWNEDWGE...................................................................................................................... 228
6 -6.350d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}  ali model 3D-neighbors follow..  14  16......KEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV-PQSPQLDRYFQIARCFRDEDLRADRQPDQLDLEMSFVEVEDELNERLMAHVFREALGVELPLPFPRLSYEEPLLEKDPGRVRALAYDLVLNGVEVGG-VFRLLGIGEE--PPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD............................................................................................................... 333
7 -5.660d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  39LNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFK............................................................................................................................................................................................................................................................................................... 81
8 -5.650d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  62..GSCWAH-ASTSAMADRINIKRKGAWPSTLLSVQNVIDSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQTYINHVVSVAGWGISDTEYWIVRNSW-GEPWGERG----------------WLRIVTSTYKDGKGARYNLAIEEHCTF.................................................................................................................................... 270
9 -5.340d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  20  49.................................................................................................................................................WNNETCDKYGPYWVIPLKESGCINVIVRDGTNKLIDSDLRVSFSDFTDRTVSVIAGNSAVYD........................................................................................................................... 131
10 -5.320d3p8ta_ d.104.1.1 (A:) automated matches {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  12  19..................................TKILDYMTKFFTDRGFKWLLPIMLSPITDPLWPDPAGEAIAMGLEKIFVLSPNIRLESRRK-DDGRHSYEFTQLDFEIEGAKMKDVMRLIEELIYGLFRKAEEWYDYKDGYGEVSSGGEREWEYEKIVAKIRAAGL-YLEIARAGKLKPSA-GAGIGVERLVRFIVGAKHIAEVQPFP...................................................................................................................... 285

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.