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Query: IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSIALDRTQTQVYIPESGQTTLENVQKTASTATPSVTVENVKSRDADTLNTGRVKVQLDAPNAAVSDKVTDLTLKAMAQLQKIVDTIAKALHAVADQTGSIAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGVGAAAGALMIAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLSRPATVLast
1 -6.040d2ih3c_ f.14.1.1 (C:) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}  ali model 3D-neighbors follow..  15  27.............................................................................................................................................................AERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGIT.............................................................................................................................................................................................. 78
2 -5.700d4agka_ b.47.1.3 (A:) automated matches {Aura virus [TaxId: 44158]}  ali model 3D-neighbors follow..  15  11............................................................................................................GKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGAVQFSGGRFTIPTGAGGPSGILDNSGKVVAIV----------------------LGGANEGARTALSVVT..................................................................................................................................................... 134
3 -5.420d4eada2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  3........................................................................................................................................................KSLHLNGPIVDKHSTGGVGDVT---MLGPMVAACGGYI-GRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREARLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNAAEVFGRMVAAQKGPTDFVENYAKYL 264
4 -4.770d3fcya_ c.69.1.0 (A:) automated matches {Thermoanaerobacterium sp. [TaxId: 60708]}  ali model 3D-neighbors follow..  9  1.................................................................................................................FDMPLQKLREYTGTNPCPEDFDEYWNRALDEMRSVDPKI-ELKESSFQVSFAECYDLYARIHAKYIKPKT----ALIRFHGYSVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDA--IFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKNAYEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPP---------STVFAAYNNIQSKKDIK.......... 291
5 -4.760d4pz3a_ d.169.1.4 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  6................................................................................................................NITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLP--------TMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICA-ANNTGVYILTS................................................................................................................................................................................................. 90
6 -4.550d3cwna_ c.1.10.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  31........................................................................................................................ATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDA--------DTEASIAKAKRLIKLYRILIKLASTWQGIRAAEQGINCNLTLLFSFAQARACAEAGVFLISPYVGRILDWGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL................. 316
7 -4.470d3gf3a2 c.14.1.4 (A:292-587) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  10  17....................................................................................................................................PAEDLYSIIPMNQKRPYDIYEVIARLFDNSEFSEYKKGYGP---------EMVTGLAKVN---GLLVGVIANVQGLLMNYPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKM---NDMIQMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFT....... 267
8 -4.340d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  6  6..........................................................................................................LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA...................................................................................................................................................................................................................................... 68
9 -4.320d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  14  113..................................................................................................................................................................................................................................................DFSNAVVDLVEKFGVENTICLYAAPMTVPHTRPTVVTAHGNDQVSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELER........ 267
10 -4.320d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}  ali model 3D-neighbors follow..  17  63.....................................................................................................................LQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSS....................................................................................................................................................................................................................................... 113
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.