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Query: IDP92583 beta adaptin protein, putative [Toxoplasma gondii ME49] TGME49_040870 [Toxoplasma gondii ME49], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDGNYFQPAKRGELHELKEELHSSNKEKKKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTTNMELKKLVYLYVINYAKAQPELAILAINTFRKDSLDPNPLIRALAVRTMGCIRLEEITEYLVEPLRRSCKDPDPYVRKTAAICVAKLFSIRPDMVGEEGFIEELTTMLSDSNPVVVANAVAALSEISENSGRNYMKNILNAKESNVNKLLAALNECTEWGQVFILDALAQFEPETPRAAESVLDRVTARLSHANSAVVLSAIKVVMKLLDKVTNPDVVRAVHRKLCPPLVTLLSAEPEIQYVALRNIELIVQKRPSILASEVKMFFCKYNDPVYVKIEKLDILVRLVSEKNVDQVLSELKEYATEVDVDFVRKAVRCIGRCAIKLDCAAERCVAVLLDLIQTKVNYVVQEAIVAIKDIFRKYPNQYESMISTLCENLETLDEPAAKASMVWIVGEYVDRIDNADELLETFLETFHDEPSIVQLQLLTATVKLFLKKPAHTQDLVTKVLKMATEETYNPDLRDRAYIYWRMLARNPEAAKKVVFAPKPPINEDADALDYNTLDRLIGNISLLSSVYHKAPETFVARAMPPSAALPKEVGSCSSDGESTDARVEQAKQSMQKQHYSSDEKEEESSPTSSEDSDSDSDGPTDLLGLSDEATPRKRSSKESSDDLFDLSSPPEDPRGVGKTLVLAADRPGNQGRTGLQVSAALTRAHGRIQLHLTLANKSSMTLNGWAIQFNRNSFGLAPAANLQVADLLSGQSAETTVPVVPGQLMSNAAPEQPLSLQVAVKTNLDIFCFTVPFDLSVVLQENSSADKDVFRQRWQNIGEARQSSLMASAPSSQSPQAVTKQMQAANISLVAQRSADTFDALYFSATTTNNLVVLAEVSLQRNGNAVKLVTRSEAAALLPLFTSTVCAALRLTPRSLast
1 -108.000d2jkrb_ a.118.1.10 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  68  1...........KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN---LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV.................................................................................................................................................................................................................................................................................................................................................... 571
2 -92.900d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  12IRNCKSKEAEINKELANIRSKFKGDDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSSTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHELVKVGGYILGEFGNLIAGDPIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER................................................................................................................................................................................................................................................................................................................................................................................... 600
3 -26.200d5o9zv_ a.118.1.2 (v:) Splicing factor 3B subunit 1, HEAT repeats {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  120..............ISTMRPDIDNMDEYVRNTTA-RAFAVVASALGIPSLLPFLKAVCKSKK-QARHTGIKIVQQIAILMGCAIL-LVEIIEHGLVDEQQKVRTISALAIAALAGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA--NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICRLNNKSAKVRQQAADLISRTAVEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEY-MRICFELLELLKA-HKKAIRRATVNTFGYIAKAI-GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEY--RVPELNVQNGVLKLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSL.............................................................................................................................................................................................................................................................................................................................................................. 707
4 -25.200d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAALGVETRSELLPFLTDTIYDEDEVLLALAEQLGTFTTGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI-SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANHVKSALASVIMGLSPIKDNTIEHLLPLFLQLKDECPEVRLNIISNLDCVNERQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS....................................................................................................................................................................................................................................................................................................................................................................................................... 586
5 -23.500d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1..............................................ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKIKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC----LLPQLTSPRLAVRKRTIIALGHLVMSGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII-DDDMSWKVRRAAAKCLDAVVSTR-YKTVSPALISRFKEREENVKADVFHAYLSLLKQLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIDKSSSSNLKIDALSCLYVIQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI........................................................................................................................................................................................................................................................................................................................................................................................................ 593
6 -23.500d2g30a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LFVEDGKMERQVFLATWKDIPNENELQFQIK-ECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILKN.... 113
7 -22.100d2z5ka_ a.118.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  4.......DEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQY--DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIEN----LFALAGDEEPEVRKNVCRALVMLLEVRMDRLHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDLVRHLPKLIPVLVNGMKYSDIDIILLGDVEEDETIPDSEQDIRPRFHRSRTVTISDWNLRKCSAAALDVLANDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH-PDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTEAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV........................................................................................................................................................................................................................................................................................................................................................................................................ 589
8 -21.100d3ea5b_ a.118.1.1 (B:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  81..AQRWITQVSPEAKNQIKTNA-VSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILTETSKAVRLAALNALADSEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPEQALYALTIATKSPNDKVASMTVEFWSTICEEEIDQSYNFALSSIKDVVPNLLNLLTRQNE-SAGACLQLFAQNCGNH---LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQVQACLIGLQDHPKVATNCSWTIINLVEQNFYPALVDGLIGAANRIDNEARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQPNARRELKPAVLSVFGDI........................................................................................................................................................................................................................................................................................................................................................................................................ 709
9 -20.700d4xria_ a.118.1.0 (A:) automated matches {Chaetomium thermophilum [TaxId: 759272]}  ali model 3D-neighbors follow..  12  2.............DINIILENSLSPDATLRHAAEQQL---HAAETNFSQYLLTLVQALANESSEIRAAAGIALKNAFSARQETRTRVKQLALETLASPNSKAGQAAAQVIAAIAAIEL-PELMHALVRNASEGGQHQKQASLTAIGFICETQDTDLRNNYIMQVVCEATQAQDSRIQQGAFGCLNRIMALYYEHMRYYMEKALFGL---TILGMKSDDEDVAKLAVEFWSTVCEEEIAIEDDVIQFVEHNLRHADWHFRDAAVSAFGAIMDGPEEKVLEPIVKTGMQPLIAMMEDESIQVRDSTAYALGRITEDPNTHLEPLIRSLFNGLMNSPKMAASCCWALMNIAERFAFNQSVTNLLTVTAPMNGDVRTAAYEVLSVFVQNAANDSLSAVASLSTVICGGKSSVPEGVFAAISALANEFAKYMEAFAPFLYNALGNQEEPSLCSMAIGLVSDVTRSLGECDNFMNYLLGNLRSTTLQFKPAILQCFGDIASAIGGHFETYLTIVAQQAATITAGPDGSYEMIDYVISLREGIMDAWGGIIG........................................................................................................................................................................................................................................................................................................................................................................................... 767
10 -20.500d4adya1 a.118.1.28 (A:309-753) Proteasome regulatory subunit Rpn2, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  6..............LNKSKSSLDGKFSLFHTAVS--ANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYADYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP---------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM---LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA------VSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL---NPQVADINKNFLSVITNKH-----------------------------QEGLAKFGACVAQGIMN---AGGRNVTIQLENADTGTLDTKSVVGLVMFSQFWY............................................................................................................................................................................................................................................................................................................................................................................................................................................. 433
11 -19.600d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  44LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI-------REVKNYVLHTLGTETYRPSSASQCVAGIACAE-PELIPQLVANVTNP--NSTEHMKESTLEAIGYI-LQDKSNEILTAIIQGMRKEEP-VKLAATNALLNSLEFTKANFDKESIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITI---EAMKSDIDEVALQGIEFWSNVCDEEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYFELIVQKLLETTDRPDGHLRSSAYESLMEIVKNSAKDCYPAVQKTTLVITAGSGGVQEDALMAVSTLVEVLGG--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSCDEVMQLLLENLGNENVSVKPQILSVFGDIALAIGGEFKKYLEVVLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIV............................................................................................................................................................................................................................................................................................................................................................................................. 773
12 -17.100d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1....................................................................................................YQKRKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLR--------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM--------ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD---CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK------KNTVYDDIIEAAGELGDK-------LLPVLDTMLYKFDDEIITSAIDKLKR.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 275
13 -17.100d1qtsa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  9  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FFQPTEMASQDFFQRWKQLSNPQEVQNIFKAKHPMDTEITKAKIIGFGSALL-EEVDPNPANFVGAGIITTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF...... 114
14 -16.700d2g30a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  31  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGYVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAITPLMPNQSIDVSLPLNTLGPVMKMEP--LNNLQVAVKNNIDVFYFSCLIPLNV...................................................................................................................... 120
15 -16.500d4b8ja_ a.118.1.0 (A:) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  13  10...................................................VEIRKSRREESLLKKRREGLQAQAPVPASAATGVDSLPAMIGGVYSDDNNLQLEATTQFRKLLSIE-SGVVPRFVQFLTREDFPQLQFEAAWALTNI-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV---LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH-LLTQNLKKSIKKEACWTISNITAGNK-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQ--CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLGLEKIENLQSH-DNNEIYEKAVKILEAY................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 468
16 -16.200d4ev8a_ a.118.1.1 (A:) beta-Catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  2..............................................................................................LNDEDQVVVNKAAVMVHQLSKKERSPQMVSAIVRTMQNTND-TARCTAGTLHNL-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-TLVQLLGSDDINVVTCAAGILSNLTCNNYIEALVRTVLR--AGDREDITEPAICALRHLTSRHQEAEM--LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLIPRLVQLLVR-AHQDTQRRTSMGGTQQQEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEIEAEGATLTELLHSRNEGVATYAA............................................................................................................................................................................................................................................................................................................................................................................................ 498
17 -15.400d4r10a_ a.118.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  12  3.................................................SLPDLVKLMCDHDESVVARAVHRAYMLSREDPNFF--FVEALMAASKSSNVNVRRNAIGALSHMSEQRGGPLLLAEIIRMLYDSLESVVHYAVTTLRNLLMHVSDQARALNAVEALTPHLHKTNPKLLAQVADGLYFLLIDDAPSKITFL----LLGPQILVSILREYSDHRKLTVVRCIRSLSVCPSNKPA-LPALYVELCTAKDERSQTAILVAMRNLS---DSATNEENLTQLIIKLLEIIRVANDGMTACACGTLSNLTCNNTR-------------NKQTVCSHGGIDALVTAIRRLP--------------EVEEVTEPALCALRHCTARHSLAEE--FPVILDQLETLRTPVIKAALGVIRNSALLQTNLIELTHTAVSLTMDILRRAITAIEENPDIAVDGVPMWGVIEGAVSALHQLANHPAVAAACCDDIGQVGNPECPPFLDLLHRLLAHPRLGSMDDEVLEREILGLLYQLSKRPDGARAVESTGSALLMESRGSQYKSVVTYANGVLSNLK............................................................................................................................................................................................................................................................................................................................................................... 532
18 -13.000d1te4a_ a.118.1.16 (A:) MTH187 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  19  1.........................................................MADENKWVRRDVSTALSRMGDE-------AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLI----KLLEDDSGFVRSGAARSLEQI--------GGERVRAAMEKLAETGTGFARKVAVNYL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 108
19 -11.500d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  3......................................................................................TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-----ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIISREVVDPEVFFNATGCLRNLSSADAGRQTMRIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHLNLMGKSKKDATLEACAGALQNLTASKGLMS-LPQIARLLQSGNSDVVRSGASLLSNMSRH-RVMGNQVFPEVTRLLTSNSEDILSSACYTVRNLMASQPQLAKQYLNNIINLCRSSASPKAAEAARLLLSDMWS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 449
20 -11.300d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  3.............DLETVAKFLAESIASTAKTSERNLRQLETQGFGLT-----LLHVIASTNLPTRLAGALFFKNFIKRPANNVELIKKEIVPLMISLPNNLQGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKLIKLYYDFNCQDIPEFFE--DNIQVGMGI-FHKYLSYSNPLLEDPDETIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTANESAMNNIIILPNVTLREEDVELFEDDPIEYIRRDLEGSTRRRACTDFLKELKEVLVTNIFLAHMKGFVDQYMSDFKDLYIYLFTALAINGKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTEILLKNLIALILKHGSSPLMRSIFRVLQTSEDSIPLFPQLLAQFIEIVTIMAKNFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATI.............................................................................................................................................................................................................................................................................................................................................................................................. 675
21 -11.300d3ibva_ a.118.1.19 (A:) Exportin-T (Xpot) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  9  73......NNESNLLELQMIRDSVFLDEPAYISNAVQHLLTLLFL----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGD--EIADSLVLKTDVQIQKDNLVKDAIRANDMSDI-----VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSININLIVNEPCMNLLYSFLQIEE--LRCAACETMTEIVNKKMKP---------------------------KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVS------------LRKESSSKELSASLKEFLKSLLERKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSW-IEFALYETYIFGEGLRGP--AFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLNSSIRNSDFNSQLYLFETV---------GVLISSGNLTPEEQALYCDSLINALIGKANAALS.............................................................................................................................................................................................................................................................................................................................................................. 655
22 -11.000d3vyca_ a.118.1.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  10  16..QSKFIASILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEV----------FKTQKNLINKSDLTLVQILKQEWPQNNMIVLKLLSEEVFDFSA-------EQMTQAKALHLKNSMSKEFEQIFQGSSSSLIVATLESLLRYLHWIPRYIYETNILELLSTKF--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLSDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE-EICSQLRLVIIENMVRPEEVLVVENDEGEIVRREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNTLSWAIGSISGTMSEDTE--------------KRFVVTVIKDLLDLTVKK--------------RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFETHEGVQDMACDTFIKFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC......................................................................................................................................................................................................................................................................................................................................................................................................... 565
23 -10.400d3l6xa_ a.118.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  11..........................................................................................................................LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC----------------------VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME--------------------IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLVDALIFIVQAEIGQKDLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLVRIYISLLKESKTAILEASAGAIQNLCAGRWTRQEKALSAIADLLTN-EHERVVKAASGALRNLAVDARNIPNLVKNLPGG-WNFSEDTVISILNTINEVIAENLEAAKKLIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE............................................................................................................................................................................................................................................................................................................................................................................................. 446
24 -9.450d1xqra1 a.118.1.21 (A:84-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  21......................................................................................MPPTAGEAEQAADQQEREGALELLADLCENMQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAEQVLGLGALRKLLRLLRDACDTVRVKALFAISCLVREQEAGLLQFLRL------------------------------------------FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP-----------ELGLEELLRHRCQLLQQHEEYQEELEFCEKL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 261
25 -9.240d4cr2z1 a.118.1.28 (Z:368-909) Proteasome regulatory subunit Rpn1, PC domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  63...........LDGLQQLDKYLYVDEPEVKAGAL--ISASGVHDGEVEPALLLLQDYVTNPDTKISAILGLGIAFAGSKNDEVLGLLLPIAAST--DLPIETAAMASLALAHVFVGTCNGDITTSIMDNFIELKTDWVRFLALALGILYMGQGEQVD-----DVLETISAIEHPMTSAIEVLVG--------------------------CAYTGTGDVLLIQDLLHRLTPKNVKGEEDADEEETAEGQTNSISDFLGEQVNEPTKNEEAEIEVDEMEVDAEGEEVEVKAEITEKKNGESLEGEEIKSEEKKKDATTDGKNDDEEEEKEAGIVDELAYAVLGILIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSV--SDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNNAR---LAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVFNDAHVLNKVTL-ASILTTAVGLVSPSFMLKHHQLFYMLNAGIR.......................................................................................................................................................................................................................................................................................................................................................................................................................... 542
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.