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Query: IDP93890 adhesin [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005760 [Yersinia enterocolitica subsp. enterocolitica 8081], from CSGID

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNMKKFVKKPLAIAVLMLASGGMVNMVHAEPTVINSKDISATKTVKEGGSFSVEFKATENEIVSGKLDADTPAFHLVMSDSGEHKGWNVRPTGASEGGQMVSADGTRVDLHTNELSWDNDHWWIDDGSERVEATFFLAAGDEVKAGEYQFTGRVEEYVELast
1 -7.510d2axwa1 b.2.3.2 (A:1-121) Invasin AfaD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1....................................................AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGVQSKDGRHELRVRTGGDGWGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVV. 118
2 -7.030d2cnza_ b.2.3.2 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  2..................................................LTVSLIPVSG-LKAGKNAPSAKIAKLVVNSTTLKE-GISNNVVDSTGTAWRKNTGKEIGVGLSSDSLRNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQ. 122
3 -5.820d6ensa_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein, PEBP {Mouse (Mus musculus) [TaxId:10090]}  ali model 3D-neighbors follow..  12  1...........AADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDP--------------------DAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYV........ 120
4 -5.730d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  69.ILKDWCYEATQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQKGEVVEGDPDKYVWALCRDQDELNPYAAWRLLDISASSTEQI........................................................... 182
5 -5.610d1wj5a1 a.4.5.59 (A:8-114) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  8  26.KMQSFYQQELETVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNALQLLQEKGLVFQRDSGSD-KLYYVTTKDKDLQ........................................................................... 107
6 -5.580d1e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  15  1..MNREEMTLLGFEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREASGEELPYSVTMMHGQDH........................................................................... 82
7 -5.560d3bp3a_ d.95.1.1 (A:) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  10...............LVAAFGGKENITNLDACIVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNL........................................................................................ 71
8 -5.520d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  9  17.RVKTWKRRWFILTDNCLYY-GIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW........................................................................ 111
9 -5.460d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  12...................................TGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHF------ILLGEDGNLLLNDIST------------NGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIF 118
10 -5.450d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  9RKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSW........................................................................ 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;