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Query: IDP00309 gene: murI; glutamate racemase CBU_0298 [Coxiella burnetii RSA 493], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNGRPIGVFDSGMGGLTVLRELVNHLPNESYIYLGDTARLPYGTKSPETVSRYATQMASILIAQNIKLLVVACNTASTAALPQLQQQFSHIPIIGVVEPGARAAVVATKNNKVALLATETTIQSGIYQNTLRALSPQIEITTQTCGLFVALAEEGCTNDEIALLVAKKYLEPIINGYHQCDSVILGCTHFPVLMEPLAAILGDQINIINSAKATATEVQSILQKNNPTPLDHPPTLSFLVTDSPERFTRIGEIFFGRGIDAKKVHLIDGQYSQSFKTPKLast
1 -82.000[M] COG0796 Glutamate racemase  ali follow..  28  23.PPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHLAIVVIACNTASTVSLPALRERF-AFPVVGVV-PAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSENIAYCMALDEDTDALLPVLQSYGFPKLQKLPI............... 287
2 -20.700[M] COG1794 Aspartate racemase  ali follow..  13  3....KILGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV-ADDIEAAC-GLPLLHIADATAV-QIKQQGIDKIGLLGTRYTMEQGFYRGRIEVITPDDTDREAVNRIIYEELCLGIIS-ETSRDAYRRVIKKLEA--QGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAADYALQ....................................................... 231
3 -12.400[E] COG4126 Hydantoin racemase  ali follow..  14  17.................LMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARKPADAYIIGC--FGDPGLLAAREIT-ASPVLGVAESAMHAATFV--ATSFSII-TTLERTRIISERLVRSYGMQNHCRSVRA---VPVLELERSSSTADAAILAECEKALIE--DRAQAIVLGCAGMSNLVERLQHRLG--VPVIDGVAAAVKFAEGIVG........................................................ 213
4 -9.490[Q] COG3473 Maleate cis-trans isomerase  ali follow..  13  37YGWRARIGLI----SNTTMEPEMWMMAPEGVSIHTGRVPLEKVSVEELLKMEEYSAIEAEKLATAGVDLIVYGCTTGSLIKIADKLSSASGVQVVTTAT-AVVEALKALGASRIAVATPYIEEVNKREEEFLRH--HGFDIVDFKSLGLLGNLDIGRVPPWRVYRLARSLSIE------GADAIFISCTNLRTVEVIGLLERDTGLPVVSSNTASMWMALKTL......................................................... 256
5 -7.500[R] COG2129 Predicted phosphoesterases, related to the Icc protein  ali follow..  11  3......VLLLSDIHSSTQNLEKILKAAEYDAVFIAGDLTQ--FRPKDAKVVDEIISEQ-------TDSCLAVHGNCDHEAILGEKYKALKFIH---------GKSVEFDGYTVHGVGGSGITPFNTPSEYTEREILEIMDNFVLRDFNILLSHCPPKGFLDRTYSGVHAGCEAIRERMIEFDVILCGHIHESHGVVD------SPQLIVNPGPV.................................................................. 186
6 -7.450[L] COG0084 Mg-dependent DNase  ali follow..  11  62......VGVSPSEVMAPGWIDTIQKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQGVFHCYSEDAEYARMALDLPYFSFAGNLTYRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLD........................................................................................................ 235
7 -6.600[F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases  ali follow..  13  83..........QIGLTRATLVKQARAEVENSVLVDNGDLIQ---GSPMGDYMAAKGIKVYKAMNPLGYDVGNIG-NHEFNYGLEFLKETINAFPYINIKEHSFKDTDGEAHTIKVGYIGKKNLEGKVTAADIKQTAEKLIEMKAKGADVIVAIPHSGISTDEYQAG--AENSVYYLTQVKGIDAIAFGHSHAVFPGKDFANVPGADID......................................................................... 310
8 -6.410[R] KOG3043 Predicted hydrolase related to dienelactone hydrolase  ali follow..  13  15CHDGTPKGRREE-IFGLDTYAAGSTSPKEKVIVILTDV----YGNKFNN-----VLLTADKFASAGYMVFV-AISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHATYQ---DLFSGVAH.......................................................................................... 212
9 -6.210[S] COG1692 Uncharacterized protein conserved in bacteria  ali follow..  10  11............GSPGRKMVKDYLGPLKKKYTIINGENAAGGRG---------ITEQIYKTFLDAGAQAVTLGNHSWDNREIFEFIDQ-APALVRPI-TPGQGYTFIKVNAIEVAVVNVMGRTFMSPNDCPFQAMDTALDDIRKRTPFIFVDMHGEATSEKQAMGWYLD---------GRVSAIIGTHTHVQT----------ADERILPKGTAYLSDVGMTGPYDGVLGMEREAVVKKFLTNLPVRFEVAKGREQGLAKSIERILINE........... 258
10 -6.070[G] KOG3354 Gluconate kinase  ali follow..  15  20......IGP--AGSGKTTMAKAVSEKLPKANIHPLNDNDRWGW-------LHNCGGACAMELDKESIKGVVLTCSALKRSYRDILRSSLEPAILRFIYLAASRETLIKRTTSRKNHYMKADMVESQ.......................................................................................................................................................... 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.