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current user: public |
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Query: IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 | |||||||
# | Score | Template | Links and tools | %id | First | MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRK | Last |
1 | -80.000 | [M] COG0796 Glutamate racemase | ali follow.. | 26 | 27 | .TALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHLAIVVIACNTASTVSLPALRERFAFPVVGVV-PAIKPAVRL--TRNGVVGLLATRATVHASYTLDLIARFTDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWEPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQSQDENIAYCMALDEDTDALLPVLQSYGF.... | 279 |
2 | -23.500 | [M] COG1794 Aspartate racemase | ali follow.. | 13 | 5 | ..LGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAVQIKQ---QGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVIDTDREAVNRIIYEELCLGIISETSRDAYRRVIQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAAD..................................... | 227 |
3 | -14.900 | [E] COG4126 Hydantoin racemase | ali follow.. | 17 | 1 | MLIKLINPNTT--LMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARKPADAYIIGC--FGDPGLLAAREITASPVLGVAESAMHAATFV----ATSFSIITTLERTRI-ISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIEAQAIVLGCAGMSNLVERLQHRLG--VPVIDGVAAAVKFAEGIVGMGLRTSK........................... | 220 |
4 | -10.400 | [Q] COG3473 Maleate cis-trans isomerase | ali follow.. | 14 | 43 | ..IGLI----SNTTMEPEMWMMAPEGVSIHTGRVPLEKVSVEELLKMEEYSAIEAEKLATAGVDLIVYGCTTGSLKIADKLSSASGVQVVTTATAVVEALKALGA---SRIAVATPYIEEVNKREEEFLRHHG-FDIVDFKSLGLLGNLDIGRVPPWRVYRLARSLSIE--GADAIFISCTNLRTVEGLLERDTG--LPVVSSNTASMWMALKTLGIREA.............................. | 261 |
5 | -7.820 | [R] COG2129 Predicted phosphoesterases, related to the Icc protein | ali follow.. | 9 | 1 | MRVLLLSDIHSSTQNLEKILKAAEYDAVFIAGDLTQ--FRPKDAKVVDEIISEQ-------TDSCLAVHGNCDHEAILGEKYKALKFIHGKSVEFDGYTVHGVGGSGITPFNTPSEYTEREILEIMDNFVLRDFNILLSHCPPK--GFLDRTYSGVHAGCEAIRERMI---EFDVILCGHIHESHGVVD------SPQLIVNPGPV............................................ | 186 |
6 | -6.950 | [L] COG0084 Mg-dependent DNase | ali follow.. | 11 | 62 | ..VGVSPSEVMAPGWIDTIQKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIP-DQGGVFHSEDAEYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRIVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMD............................................................................ | 237 |
7 | -6.880 | [U] KOG3325 Membrane coat complex Retromer, subunit VPS29/PEP11 | ali follow.. | 13 | 6 | ..........................LVLVLGDL----HIPHRCNSLPA---KFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAG-----------------------DVHIVRGDFDENLNYPEQKVVTVGQFKI----------GLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEH------ENKFYINPGSATGAY........................................ | 143 |
8 | -6.760 | [M] COG0860 N-acetylmuramoyl-L-alanine amidase | ali follow.. | 12 | 31 | ....FIDAGHGG-------------------HDPGAVGNGLREKDIALAISLYQKEALEDAGYSVML----SRSTDRFLSLKERTDKAFISN-GRGSEVWCSIYGGVGRSYA-LSSLFYNRGVKTRQGANGDYLHVIRESRMPAV--LVEHGFIDNAGDARILASQQNLRQAAMATVNAIRSV................................................................... | 201 |
9 | -6.520 | [R] COG1712 Predicted dinucleotide-utilizing enzyme | ali follow.. | 14 | 2 | LKIGIVGCGFIGGQICRAIDGGEVSAELYALCDSSESKALELAASLKTCKPSYMKIEELIRGVDLIIESANAVRFIVPQALKAGCDVMIGALADEELRDTLFGLAKEHNCKLYFPSGAVVGIDGLNS........................................................................................................................... | 133 |
10 | -6.360 | [S] COG4884 Uncharacterized protein conserved in bacteria | ali follow.. | 11 | 41 | .PFG--DEGADALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSILEEDVRAQLLVDEMSTIQSNMITYATAFGQIK------VMGKISHKLKKMGLNALARHQLTAKILQWGDGQDSPILQKMID....................................................................................................................... | 163 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25. |