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Query: IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLNGGKPRLast
1 -64.100[T] COG1716 FOG: FHA domain  ali follow..  17  23.RFLLKVLAGANIGAEFHLDSGKYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNVLIEDLGNGVIVEGRKIEHQSTLSANQVVALGTTLFLLVDYAAPSDTVMATISSEDYGLFGRPQSPEEIAARAAEEEEEALLFGIGTASLFHTKEVVSIDQIDLIHDIEHVIQQFPTVRFTFNKNNGQLFLIGHVRNSIDKSELLYKVDALSFSVDDNVIDDEAVWQEMNILLSKNPEFKGISMQSPEPGIFVISGYLKTEEQAACLADYLNLHFNYLSLLDNKVIIESQVMKALAGHLVQSGF-ANVHVSFTNGEAVLTGYINNKDADKFRTVVQELQDIAGIRAVKNFVVLLPAEEGPGRYRVTGFSKCGDISINVVVNGRILTRGDIL-DGMTVTSIQSHCIFLEREGLKYKIEYN..... 468
2 -14.900[T] COG3456 Uncharacterized conserved protein, contains FHA domain  ali follow..  7QTLSLQVIN-SGRAARCLFTQQ--NVGHAP-ECHWSVQDRQIPAQAFTVILHDGTFCLRPQTAQLWLNQAK-SDLIQLRQGDEIQIGRLMVRVHLNRGDIPHYDEEMATPETIVTNRDMLTDTLLSTEGAPHYPGMTHRHQLADTVVNGFSADPLQALQSESLITTGDPLSGIAAVRPSAPLSDPASNGGINTPFMDLPPIYASPGDHNDDISAAEMAQRHLAVTPLLRGLGGSLTVSNSDDADDFLAIKGLLDLQQQRNSLSDKHLRPLED-NPLRLNMDYATALDVMFAEGKSPVHLAAPAAVSESLRNVRHH-ANRAAIVESLRVLLDAFSPQ................................................................................... 358
3 -13.700[KT] KOG2293 Daxx-interacting protein MSP58/p78, contains FHA domain  ali follow..  13  620...AFAVLYGRY---KHYIKKPEVLVGRSTEDVDIDLGREKISRRQAIIRLGDDGFHIKNLGYSISVNEKEVDPGQSLKSDCLVEIRGMPFIF...................................................................................................................................................................................................................................................................................................................................... 717
4 -13.600[R] KOG1881 Anion exchanger adaptor protein Kanadaptin, contains FHA domain  ali follow..  10  166.PYSLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHNGPGFYLYDLGSGTFLNKTRIPPRTRVHVGHVVRFGGSTFILQGPEEDREAESELTVTQLKELRKQQQILLEKKMLREDSDEEEEMDTSERKINAGSQDDEMGCTWGMGEDAVEDDAEENPIVLEFQQEREAFYI------KDPKKVLQGFFDREGEELEYEFDEQGHSTWLCR----------VRLPVDDSTGKQLVAEAIHSGKKKEAMIQCSLEACRILDTLGLLRQEAVSRKRKAKNWEDEDFYDSD-----DDTFLDRTGLIEKKRLNRMKK-AGKIDEKPETFESLVAKLNDAERELSEISERLKASSQVLSESPSQDSLDAFMSEGSTLDGVSRKKLHLRTFELRKEQQRLKGLIKIVKP. 580
5 -9.660[T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain  ali follow..  11  258.RWRLYPFKNDEVLPVMYIHRQSYLLGRHRRIADIPIDHPSCSKQHAVFQYRRVKPYIIDLGSGTFLNNKRIEPQRELKEKDVLKFGFSIYVLLHESSDTSEIDRKDDEDEEEEEEVSDS........................................................................................................................................................................................................................................................................................................... 396
6 -7.600[U] COG3031 Type II secretory pathway, component PulC  ali follow..  20  70........................................................................................................................................................................................................................................................................................................................................................KQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKYLQGETLGSNAVIEEINRDHVMLRYQGKIERLSLAEEER. 147
7 -7.190[T] KOG3872 FOG: FHA domain  ali follow..  12  160HIIILKSLNATFETKFLVVPPDGLKLGRQVRPDNGNFDSRVLSRNHACLSCDSGKIYIRDLKNGTFVNGVKIRNDVELKVGDTVDLG............................................................................................................................................................................................................................................................................................................................................ 273
8 -6.760[S] COG1652 Uncharacterized protein containing LysM domain  ali follow..  213......VIAGAQPGAKLEILSNGKVIAQTTIDGTAAVFDNPLPPGDHELVLRSTD------------NGKATQSEEV-----------ATVSVPQSKSGELLAMVSKPGKASRVLAMPEAAPPALQPQQATPSQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSVQVTAVEFEGSKIFVAGSAPGGST----------------VRALVDDKEIGKSTT---AVGSHIITVEELNADGTAKVRVRVPERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEKLRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKS--AELHIIAPPAPVPQVPAGPQTFEQAPLAESQNSVIIRRGDTLWQG----QGVRYTTINEDQI-LIEPGQIFGVP....... 655
9 -6.610[R] COG2823 Predicted periplasmic or secreted lipoprotein  ali follow..  11  13......................................................................................................................................................................................ALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDE-KEARINVTAYQGKVLLVGQSPNAELSARAKQIAMG-VDGANEVYNEIRQGQPITTKVRSQLLTSD-SSNVKVTTENGEVFLMGLVTEREAKAAADIASRVS..................................................................................... 178
10 -5.410[NU] COG3168 Tfp pilus assembly protein PilP  ali follow..  18  101.....................................................................................................................................................................................................................................................................................................................................................................TFEMVGTLSNAQG-LVKGAGGRVRVGDYLRNDGKVVGISEGKIDVIE-ERPRSLTLKERS.. 174

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.