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Query: IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKKFVYLLLLVLFMTVLPFQMLEAQAASTSWIEQELDGNEPFIAETEKILSKNRQDITLADLETIQKIHVFGADSIPNKISDYKNLTALEANYGTITEVPESVGSLKELVTLNVDENNLQEFPMVIFQLPKLEVLYISRGNITEIPTEITTLASHLKVLDVSNQKLVTIPDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEFYDNPTIDYLQKQDQLTYTGGTIEVPLNTDFKQLTPDKTNLGLKSNIPLFSQHEFMYYDDGTSANILTNGVATDVGDGYITIKSTLSTNSNPFAKVRVPIKVTAPLKGADVTVQYLDSNGDTLATPDILSGNEGDAYASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEEGKILTASDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPIKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYSIFGFITVCLSFVLFFRLKKQKNSLast
1 -46.800[K] KOG0620 Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins  ali follow..  11  18.EYKDKQGGGAGQPLTKSENNDGKKTLTNGMSRVHR---------------VLTEDEIASGRSTRWTELEIGRVKNLSPSLWQLTHLSALFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMISLCHLYLNNNQLRVLPYELGKL-FRIQTLGLQGNPLSPEISKIYHETNGAQKILQFLLDHLTTFNNPSSHNRNGIKDQKYRPPEPPHVYDYVEM................................................................................................................................................................................................................................................................................................................................................................................................................. 226
2 -44.700[Z] KOG0532 Leucine-rich repeat (LRR) protein, contains calponin homology domain  ali follow..  11  33.SSGAGPGFGPGSWSRSLDRALEEAAVTGVLSLSGR--DLTDTTRADLSRNRLSEIPIEACHFVSLENLNLNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNL-PLKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNL-EALRDLNVRRNHLVHLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQTITLDNNPLQSPPAQICIKGKVHIFKYLNI------------------QACKIAPDLPDYDRRPLGFGSCHEELYSSRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRGSLVVTNGGVEHDLDQ-AYIEQRRISHEGSPVKPVAIRE--FQKTEDMRRYLHQNRVPAEPSSLLSLSASHNQLSHTDLELHQRREQLVERTRREA................................................................................................................................................................................................... 483
3 -40.100[S] KOG0472 Leucine-rich repeat protein  ali follow..  14  35.ARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDINQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSL-SSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLETIPPELAGMESLELLYLRRNKLRFLPEF-----PSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNLH-LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKESRVNIHAIITLKFDAVKSNIVTSINFSKNQLCEIPKRM-VELKEMVSDVDLSFNKLSFISLELKLTFLDLRNNFLNSLPEEMESLVR............................................................................................................................................................................................................. 496
4 -34.800[S] COG4886 Leucine-rich repeat (LRR) protein  ali follow..  13  404.KKITANLDISRSNLEVIPVKIYPYHELISLNVSHNMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMNDIYELDPLI-SRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSL-VKLKHLYLQFNDLSNLPQEIGLLKNLETIDLSYNAITNIASLSECPKLNSINVACNLLSFYEYSNPSATFIYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPVATSKKLTTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHSGNELANLSISSTAQVLLETLYANGNRLSS---FPKNEALSKSLRFLDISTNNLQN............................................................................................................................................................................................. 914
5 -30.400[T] KOG0531 Protein phosphatase 1, regulatory subunit, and related proteins  ali follow..  14  89.ILYSDRLSLERQKLTVCP-IINGEDHLRLLNFQHNIQNISNLQKLISLDLYDNQIEEILSTLRCLRVLLLNRIKKI-SNLENLKSLDVLDLHGNQITKIEN-INHLCELRVLNLARNFLSHV-DNLNGLDSLTELNLRHNQITFVRD-VDNL-PCLQHLFLSFNNISSFDSCLADSSSLSDTTFDGNPIAQESWYKHTVLQNMMQLRQLDMKRIT.......................................................................................................................................................................................................................................................................................................................................................................................................................... 307
6 -29.800[T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats  ali follow..  8  5.LDLLLGVVLMAGPVFGIPSCSFDLNTTERLLLSFN-SSFPFLEQLQLLELGSQYTPLTIDNLPNLRILDLSKIYFLHPDFQGLFHLFELRLYFCGLSDADGYFRNLKALTRLDLSKNQIRSLYLHFGKLNSLKSIDFSSNQIFLVCEHELE-GKTLSFFSLAANSLYSRVSVDLAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNYGLPKVAYIDLQKNHIAIIQDQFKFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPKINLTANLIH--LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMWDVFEGLSHLQVLYLNHNYLN-------SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG......................................................................................................................... 603
7 -28.000[T] KOG4194 Membrane glycoprotein LIG-1  ali follow..  11  32...VGNVVDCSSLDLSEIPTTI--PNNTRILLLSDN-SRLKGFYFLQTLDISNNIIRHFFYNLPNLKILNINRLARIPRGSHELGHLEKLDLRSNLISTVTSELSYLAAVRSVDLSRNLISYLPKPTSAKVNIEKLDLASNSITDIGTDHFSSFNTLVTLKLARNHITTLNQFFSRLRKLESLDLTRN-MIREVRFLAFNQLPSLQNVSLARNDVYRLDDGMFYACEGLKHLNLSTNRVQAVTEGWMFGLTSLEVLDLSYNQIQSFHISSSHTPKLKWLSLHSNRIQSLPSSFRVLRQLEELILSANSIDSLHKALVGMSSLHKLDLSSNTLAVCVEDG-----AVLYNTSMPFLRSLRFTNNQLRVIPKRAFERFPA--------------------LEELDLTDNPIAT....................................................................................................................................................................................................................... 429
8 -25.900[R] KOG0619 FOG: Leucine rich repeat  ali follow..  13  36..AQNKSVSCHRRRLIAIPEGI---IETKILDLSKNPEEFISYPLLEEIDLSDNIIANAFNNLFNLRSLRLNRLKLVPLGFTGLSNLTKLDISENKIVILLDMFQDLHNLKSLEVGDNDLVYISHAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLISLHLKHLNINNMPVYFKRLFHLKHLEIDYW-PLLDMMPANSLYGLNLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQLRTIEPHSQGLRFLRVLNVSQNLLETLEENVSSPRALEVLSINNNPLACDCRLLWILQRQPTLQFGGQQPMCAGPDTIRERSFKDFHSTALKLQHLLVDEGQTVQLECSADG---DPQPVISWVTPRRRFITTKSNGRATVLGDGTLEIRFAQDQDSGM-YVCIASNAAGNDTFTASLTVKGFASDRFLYANRT.......................................................................................................................................................................... 514
9 -25.900[O] KOG3207 Beta-tubulin folding cofactor E  ali follow..  8  140QFILCRELNLYGNLLYKWKT-LEYFPRIQELNLRRN-----RMQCFNEEEDDDESEGDDHVYSDSCKKLVISECNSIDSILLRFPSTSDVVAFGNDLTRFSVSEAVSSRLTSLDLEDNPFKTLDSIHGTFPNLTQLSVANCGITSLFDGSIKF-PKLEYLNIKRNSIVEWKS----VNSIRSLKSLKRLLFDCKKLSTEKGVHAYEIVIAKLSTLIDLNRFDVSEVERRSAEIR-----------FLNKYAGLNDNEDHQDDIKRLIEIHGEPTLDTAKKGLAVVKIRIECGNRVETRRLPLGMSIQKIRDMLARLFKVPNTSKIRLYLVMSEKAKQHRIELEN-----------PLREFGHYSPSE................................................................................................................................................................................................................................................................... 483
10 -25.500[T] KOG2087 Glycoprotein hormone receptor  ali follow..  14  44LPRNAIELRFVLTKLRVIQKGFSGFGDLEKIEISQNADVFSNLPKLHEIRIEKAN-PEAFQNLPNLQYLLITGIKHLPDVIHSLQKVLLDIQDNINIHTIERSFVGLSFESVILWNKNGIQEIHNAFNGTQLDAVNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYLENLKKLRARSTYNL...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 252
11 -24.800[R] KOG3665 ZYG-1-like serine/threonine protein kinases  ali follow..  13  60.SFILTKVNFENVEMGPQTFGLLTQHNLKSLVLGNRTSQIDHLDLSGRSQFSTAWLKTTGQQLPLLRTLNVSGVKDFFQFCKSFPNLYSLDISNCGVTILTG-ISRLKNLRHLSLRSLIYESWYRELFALKLLNVLDLSMHSTHHARRNMQRFLDELRFLECSGNLMDELEELLITHSHLHQLAIVDC...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 274
12 -24.000[R] KOG4579 Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue  ali follow..  10  1.................................................................MLKKMGEAVARVARKVTVESGSDTLDLAECKLVSFPIGIYKVGQIHLITLANNELKSLTSKLAAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGARAPLP....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
13 -20.900[O] KOG0529 Protein geranylgeranyltransferase type II, alpha subunit  ali follow..  12  523.MNNIICLRLNNLTLSRIA-AVEKLLFVQMLDLSHN--ELHSAEG--------------LEAMQLLCCLNLNRIRSFSDSLRHLKQLRVLDVSHNHICGE-LPVDTTRYLCSSPLSNSGETGRELVLRDLMKLKQLDIRGNDLIFAGEEFSSVRQVVPKLVLDGHKLTS......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 687
14 -20.800[A] KOG1644 U2-associated snRNP A` protein  ali follow..  16  2.......VKLTAELIEQAA-QYTNAVRDRELDLRGY--KIPVIENLG-------------ATLDQFDAIDFNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLQALPCLTELILTNNSLVELGDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRLDFQKVKL......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 152
15 -18.400[S] KOG4308 LRR-containing protein  ali follow..  14  727.FSRLTVLRLSVNQITDLSEELTKYKIVTYLGLYNNTKILDECKGLTHLKLGKNKITSEVKNSKSISEVGMWGAKAFAEALRNHPSLTTLSLASNGISTLARALQQNTSLEILWLTQNELNDLAEMLKVNQTLKHLWLIQNQITALADALQS-NTGITEICLNGNLIKP......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 938
16 -16.900[AYT] KOG1909 Ran GTPase-activating protein  ali follow..  13  91..SKLRYLNLSDNALRAFASLINSQHDLEELYLMNDGISED----------AARAVRELLPSTDKIRVLQFHNATAIAEIVRECPSLEDFRCSSTRIGSLAEALEHCSHLKKLDLRDNMFGVLAKTLSVLTHLTEIYMSYLNLEDLSEALLKSAPSLEVLELAGNDITVLAACIASKQSLAKLNLSEN...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 298
17 -16.600[TA] COG5238 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport  ali follow..  14  42..KTCTKLDLSGNTIEALAKCIAENTQVRESLVEVNFADLYTSRLVDEVVDSLKFLLPVLLKCPHLEIVNLSDIELLEDYIAHAVNIKHLILSNNGMGPIGKALFHLPFLETFICGRNRLENLALGLSHSEGLKVVKLYQNGIRPLIHYGLQYLKNLEILDLQDNTFTK......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 245
18 -14.900[M] COG4932 Predicted outer membrane protein  ali follow..  15 1304...............................................................................................................................................................................................................................................................................................................................AELADATFE---LRNESDTLVRENLVTDDNGE-ISVADLAPGDYKLIETKAPAGYQLDATPVNFTIDFNQSEAAKADATFELRNESDTLVRENLVTDGEIGDYKLIETKAPTGYQLDATPVNFTID---FNQSEAAKVTKTNKKKI---GTIIVNFIDVDGNQLNKEVHTGNVGEEYSVKAKEIVGHTLVKDPANKKGMYKETSQEITFVYEKKAMPITVEPTEPSKPTEQLTESATVAEPKPIKQNIKT---------TNKSPNNKRKLPSTGDEF--PYTMLFTGLFVSVAGVFFLRKPKQIK.. 1622
19 -14.300[O] KOG2120 SCF ubiquitin ligase, Skp2 component  ali follow..  12  205.CSKLQNLSLEGLRLSD--NTLAKNSNLVRLNLSSSCSRLDELNLSWCFDFTEKHVQVAVAHVETITQLNLSGYSDLSTLVRRCPNLVHLDLSDVMLKN--QEFFQLNYLQHLSLSRYDIIP--LELGEIPTLKTLQVPDGTLQLLKEALPHLQINCSHFNKKNQEIWGIKCRLTLQKPSCL............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 424
20 -11.000[R] KOG1947 Leucine rich repeat proteins, some proteins contain F-box  ali follow..  9  357..EGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDCKSLRRLSLSGLQVFLYIGMYANQLEMLSIAFAGDTDMLYVLNGCKKMKKLEIRDSPFGDLLADVSKYETMRSLWMSSCEVTL--KRLAEKAPWLNVEIINENDNNRMEEN..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 544
21 -10.700[R] KOG4341 F-box protein containing LRR  ali follow..  11  149..PNLEHLSLTDASCENLGRYCHKLNYLNLENIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENEAHMGAIKKLNLLQFQLTDVQNIANGATALEYLCMSNNQISDLVSLGQHSHNLKVLELSGTLLGD--IPLARGCRQLERLDMSDHTINSLANNCTALRELSL............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 364
22 -10.300[T] KOG4658 Apoptotic ATPase  ali follow..  12  510.WGAVRKMSLMDNDIEEITCES-KCSELTTLFLQSN---------------KLKNLPGAFRYMQKLVVLDLSYFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGVHGDASVLKELQQLQNLQELAIT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 661
23 -9.040[A] KOG3763 mRNA export factor TAP/MEX67  ali follow..  16  205...................................KPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVLNRRSCMAATLENIPELLSLNLSNNRLYRLSSIVQKAPNLKILNLSGNELKSE-RELDKIKKLEELWLDGNSLSTYISAIRERFPKLLRLD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 352
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.