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Query: IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRAKLLAEDAELast
1 -140.000[J] COG0752 Glycyl-tRNA synthetase, alpha subunit  ali follow..  100  1MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRAKLLAEDAE 305
2 -57.700[J] COG0013 Alanyl-tRNA synthetase  ali follow..  15  2..KTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPNSGVATLKYFDGSVVPENPRLTNAQKAIRTNDGKTARHHTMFEMLGNFSIGD-YFRKEAIAFAWELLTSSEW-DPTHLVPIEDNFWEIGA-GPSGPDTEIFFD-IEIWNIVLSQFNADPELPQKNIDTGMGLERMVCIIQGGKTNFDTDLFLPI-----------------------------IREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRLRRAVMHGKKLGIQGGKIMQYPEVLEKEDFIMQIIDRE 359
3 -53.500[J] KOG0188 Alanyl-tRNA synthetase  ali follow..  17  2..KLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPNAGMNQFKIFLGTADPNSVRVANTQKCIRANDGKDVYHHTFFEMLGNWSFGD-YFKKEICSWAWEFLTQRDLGLKPEHIL-KDNFWEMGETGPCGPCSELHFD-LEIWNLVFIQYNREKQLPKKHIDCGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGAD---------------------DVDGIDMAYRVLADHARTITIALADGGTPDNTGRGYVLRLRRAVRYATEK-VVDLLGDAFPEVKKDPQHIIDIINEE 377
4 -9.190[J] COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type)  ali follow..  10  155VDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF--ENFRFRKDEKRSKYYI-----PDTQTEVGWIEIATIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKM-VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEP-------------SPCSFLAFEGEMMGRNVRVYVVEEEENTKLCNEVVVYKGDIYGIPKTKKWRS......... 452
5 -9.130[J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit  ali follow..  13  110......LTATITEVEDLFIGLGFSVAEGPQIETDYYNFQARTMEKYKGKGPIKIICPGKVFR-RDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFG--EERSIRLRPSFFPFTE-----PSVEVDVGWIEILGA-VLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDI............................................................................................................................... 327
6 -8.970[J] COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II)  ali follow..  9  44.......ATLLRQIREFFAERNVLEVETPAMSHATVTSPEFHMKRLLAAGSGCIYQLGKAFR-NEENGRYHNPEFTMLEWYRIGFDH--HALMDEMDALLQLVLRCGSAERMTYQESIGIEPKIGQITPAFEVYFKGIELAN--FHELDNPAEQTEQPIDVALGIDRLIMLALGEDHIDKV............................................................................................................................ 341
7 -8.190[J] KOG2784 Phenylalanyl-tRNA synthetase, beta subunit  ali follow..  15  382..............................THTTAVSARQLYQLAQEGFRPSKLFSIDRVFR-NETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKKLG----ITNLRFKPTYNPYTE-----PSMEIFAKWVEIGNSGMFRLPMGLPADVNVAGYGLSLERPTMIKYGINNI............................................................................................................................... 529
8 -7.690[J] KOG0554 Asparaginyl-tRNA synthetase (mitochondrial)  ali follow..  11  232.......NTLAYATHKFFQESGFVWVASPIITASDCTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMI-ELAFADLDDDMACATAYLQYVVKYVLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPV-DLQSEHERYITEEAFGGRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREERLEVLEARLDELKLNKESYWWYLDLRR--------GSVPH---AGFGLGFERLVQFVTGI--NIRDVIPFP................ 559
9 -7.310[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  9  246.......AAATRAMRDHFFAAGYTEVAPPTLVQTQVTQSSQLYLETCNAALGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAFITF--DQLMDRIEALVCDTVDRLLADRMPYKE---RCADDNELTESVDLLMPGVEIVG-QLLAAFEKGGLDSKNYYYGLGLERFICWLTDTNHIRDVCLY......................................................................................................................... 536
10 -7.160[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  11  258.......AGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFK-LIAADRERVFEIGPVFRAEDSNTYRHMTEFTGL-EMAFNEHY--HEVMEFIEKLFLYIFKTIREKRFHFKD---PDPEDPRYSNSYDFFMKGQEIMS--YIDAFAI----PPHAGGGIGLERVVMFYLNLPNIRLASSF......................................................................................................................... 571
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;