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Query: IDP90101 gene: sseL; deubiquitinase [Salmonella typhimurium LT2] STM2287 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDEALTLLFSAVENGDQNCIDLLCNLALRNDDLGHRVEKFLFDLFSGKRTGSSDIDKKINQACLVLHQIANNDITKDNTEWKKLHAPSRLLYMAGSATTDLSKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQGLVQESPLLSVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLVNTGDHWLLCLFYKLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISESDEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNAGQNDPATTLREFAENFLTLSVEEQALFNTQTRRQIYEYSLQLast
1 -40.100[R] KOG3246 Sentrin-specific cysteine protease (Ulp1 family)  ali follow..  12  14...........................................................................................................................RQSDVSLLDPPSWLNDHIIGFAFEYFANSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDGTHWSLLVY--LQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAAQQNSYDCGMYVICNTEALCQNTESLLQLLTPAYITKKRGEWKDLITTLAKK........... 212
2 -28.300[O] KOG0778 Protease, Ulp1 family  ali follow..  279.............................................................................................................................EDICTFINGKWLNDEVINFYMSLLTERSEK-TYAINTFFVPRLLQAGHAGIKRWTRKVDLFSKDIIPVPVHCNGHWCMAII--HLRNKTIRYYDSKGKPNRPVLDALEKYLREESIFKPKKQFDTSD-PRQLDGSDCGIFSCMFAEYITCDV---PITFTQSEMLYFRKKMALEIVDGEL............ 468
3 -26.600[O] COG5160 Protease, Ulp1 family  ali follow..  382.............................................................................................................................KDLHTLRNRQWLNDEVINFYMNLISERSKI-VHGFNTFFYTSLQRRGYAGVRRWAKKARVADMDAVFIPVHLDVHWCMAVI--NKSKKRFEYWDSLAGSPGKVFDLLRDYYIAETKGADWENFMDDNSPRQRNGHDCGVFACKTAECVSRNV---PVQFSQNDMPELRIKMAASII------DAQIY..... 568
4 -6.590[R] KOG3086 Predicted dioxygenase  ali follow..  10......ASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAII-TYCGSCAAHKQVDPSITRRIFIL--------------------PSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQL----------DPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQS....................... 276
5 -5.290[D] KOG3431 Apoptosis-related protein/predicted DNA-binding protein  ali follow..  16  27.QETAKNGMISQI---DQAAMQRLSNLAVAKPEKAQMVEAALINMARRGQLSGKMTDDGLKALMERVSAQTQKATS................................................................................................................................................................................................................................................. 99
6 -5.180[S] COG1728 Uncharacterized protein conserved in bacteria  ali follow..  24  110..DDKLIQLTEEMMDQEKPAIDLLERIG--------EIKGLLINLYT.............................................................................................................................................................................................................................................................................. 146
7 -5.060[R] KOG2934 Uncharacterized conserved protein, contains Josephin domain  ali follow..  11  11................................................................................................AKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTP-NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALPLKLPLKRQHWICV----REVGGAYYNLDSKLKMPEGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQ.......................................................... 196
8 -4.790[S] COG4453 Uncharacterized protein conserved in bacteria  ali follow..  12  21LSADKQELLQLAADLSGSTLNQFVLQSALRAAELTVEQSRRFVALLDEPAKPNEALRRAMERFRKTKLGTADSTFNLERRSQH.......................................................................................................................................................................................................................................... 116
9 -4.450[U] KOG3385 V-SNARE  ali follow..  12  38.NERALEGLQDR--------VILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSR.................................................................................................................................................................................................................................................... 101
10 -4.400[K] KOG4109 Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30  ali follow..  22  78VVPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAENQ..................................................................................................................................................................................................................................................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 5 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.