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Query: IDP92131 alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] TGME49_019540 [Toxoplasma gondii ME49], from CSGID

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAMTEEERRAKIEEISAKGKAKGWSGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQYLPANRVLPFGAKENFWEMADTGPCGPCSEIHYDRIGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGMGLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADHARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETFPEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYGFPLDLTQLMAEEVGLQVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQSRKVPPTDDSAKYEWNVKDQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDFILHIGSMSKGTLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPRELAALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEELGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVTASAATGTAAIAFVPAACSQLHAASWLTACVGLLGGKGGGKGERAVGAAKEGAADKVDAAVAEATAFAEKKYGALast
1 -223.000[J] KOG0188 Alanyl-tRNA synthetase  ali follow..  43  1....................MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALPKDRLYVTYFGGDAAS-GLEPDLECKQMWLDGLKPEHILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPP-YQGRVGADDVDGIDMAYRVLADHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLG--NQTTIPGDVAWRLYDTYGFPVDLTQLMAEEKSLKIDMDGYEAAKHNSYVLSQGKGASKIEEINL----DVHAISQLQEQGVPPTNDTFKYKY---EAVSDERDSAYNYGVCNSKIVALRFENQFVNEI------TSGQKAGIVLDKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELHIDVERRWLTMKNHSATHALNHCLLQVLGKD-------------------------------------TEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDEL--EQNPDSEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVRLKATIDNDKSGKDSKSHVKEIVESHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSVTVVE--RAKTLCEANPNATVLVEQLEFNNTKALDAALKQVRSQLPDAAAMFLSVDSKKIFCLSSVPKSAVKGLKANEWVQHVSATLGGKGGGKPESAQASGTNY--EKVDEIVQLASKFAQSKLS. 966
2 -207.000[J] COG0013 Alanyl-tRNA synthetase  ali follow..  32  1....................MKTMTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPE-----NPRLTNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTEWFEFPAEKLYITYYPA---------DKDTYNRWVEGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEVYDPEHAEDIENDRYIEIWNIVLSQFNADPRSEYPELPQKNIDTGMGLERMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTY---------SPDSENMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRAVMHGKK-LGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDREEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDEGFKIDHEGFKVAMKAQQERARAAVVKGGSMGA---------------------------QNETLSSIEVESEFLYEDKTTQGKLLVSIQDDEIVDE--------VSGKAQLVFDVTPFYAEMGGQVADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLSPLKVGESYTLEIDKERRAAVVKNHTATHLLHAALHNIVGNH-------------------------------------ALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSLKVETVETDIATAKEM-GAMALFGEKYGKNVRVVKIGD------------------YSIELCGGTHTQTTSEIGLFKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQT--------------------------SQVLAKVTSLQDELKTAQKENDALAGKLAASSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKELSDVLVLVAKIGEKVSLLVASKSS---DVKAGNLVKELAPFVDGRGGGKPDMAMAGGSKA--AGIPELLAAVAEKLA..... 872
3 -56.300[R] KOG2105 Predicted metal-dependent hydrolase, contains AlaS domain  ali follow..  20  13....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKKVSTKRPPPAMDDLDFTTTVVSCCPAELQTEGSN--GKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTIND------ISVLRVTRRGEQADH---FTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWE---------------------------------------LGRFRSAIEL-DTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEG------------------VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAE---------------------------DHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPD--WGGVVILHRKEGDSEFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPAS------VETLGPRVAEVLEGKGAGKKGRFQGKATKM--SRRMEAQALLQDYISTQSA. 426
4 -56.100[J] COG0752 Glycyl-tRNA synthetase, alpha subunit  ali follow..  17  1...................MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEK---------GAGTMSPY-TFLRAIGPEP-----WNAAYVEPSRRP----AD----GRYGENPNRLYQHHQFQVVMPSPSNIQELYLESLEKLINPLEHDIRF------------------------------------VEDNWENPSTGSAGLGWEVWLD------------------MEITQFTYFQQVGG-----LATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLPAYDYVLKCSHTFNLLDARGAVSVTERAGYIAR--IRNLARVVAKT--------------VAERKRLGYPLLDEETRAKLLAEDAE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 305
5 -55.000[R] COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain  ali follow..  25  2...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TEVLYFLDREFEAIVEKV------------------TDDKYVVLDRTAFYPESGGQPSDTGKLVREEDGAEFEVVYVGKFNGDISHEITPVDGNLKAGDRVRGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQI---------------------------------------TGNQLGLDKSRVDFSL-EAFDRDKFAEYEKIANKVITENHPVNLYLVSRKEAEEKLSRLTTLAKGFSEEVRLVEIEG------------------ITIEACGGTHLKNTGEIKGIKIEKLQNKGKSNRRMYFTLLD............................................................................................................................................................................................................ 245
6 -8.620[L] COG0587 DNA polymerase III, alpha subunit  ali follow..  13  14.............................EPRFVHLRVHSDYSMIDGLPALAITDFTNLC---GLVKFKPI-IGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYRDWLIKHKEGKFLLRGNQVQVDQCLAFYQEHFPDCYYLEL-----IRTGRPDEENY---------LHAAVALATERGL-------PVVATNDVRFIDESDFDAHEIR-VDPKRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVDNGVPVGPGRGSGAGSL----VAYALKITDIDPLEFDLLFERFLNPERVSMPDFMEKRDLVIEHVAEMRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKAFAAEPQLA-ADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYAGKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIAS-------LEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG--MVDNFIDRKHGREAISYPDIEWQHESLKPVL----EPTYGIILYQEQVMQIAQVLSGYSLGGALRRAMG---KKNPAEMAKQRSVFDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDI--------NSGLYHFHVNDDGEIVYGIGAIKGV-GEGPIEAIRKEGGYFKELFDLCARVDTKKLNKRILEKLIMS--GAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVD.............................................................................................................................. 933
7 -8.530[E] COG2902 NAD-specific glutamate dehydrogenase  ali follow..  11  561..............................SRRVPLLENLGFNVISERTFDIGVVSEGEKRDIVLHDMELSVAAGTTLDLPHYGPKLEEAFLAAFSGKVDNDNFNRLGLNVREVSVLR-----AYARYLRQTGIVYSQEHISETLYKYPDRNIFALFKAVKKLAEIHKAIEAALSGVPNLDEDRTLR--LRTNYFQKNADG---PFREIFV----ARGGLRWSDRGQDYRTEVLGLVKAQQVKNAVGAKGGFFPKNLPAGGSRDEVFNAGREAYKTY----IRTLLSITDNIVDDAIVPPADT---RLDGDDPYFVVAADK----TATFSDTANGLAHEAGFWLDDAFASGGSAGHKKMGITARGAWETVKRHFREMD----------------TDIQTTPF-TVAGVG------------------MSG-------DVFGNGMLLSEKIFDHRDIFIDPDPDTDKSFAERKRLFELPRSSWQDYDRSTLSAGAMIISRSEKSVTLTPEAVAAIGLDKSVATPFEIMT-AILKAPTDLLWFGGIGTYIKAAVETNAEVGDRANDPI--RAKVIGE-GANLGQKGRIAYALAGGRCNSDAIDNSAGVNSSDVEVNIKIALASAVNSGRLTMPKRNQLLASMT-----PDVAQLVLRNNYQQSLAISLTERLGLANREELGRLMGALEATGQLNRKVE---TLPNNAEFSERYASGKPLTRPEIGVLLSYAKLTLFDALASPLPDEPYLQHLLLDYFPAKMQKNYANDIKAHRLHREIVATALANAVVNRGGPGFVQKLADASGLLAADVVKAAVIVEDKRLWTEVDALDGVGGQVQNGLYATITRIFSDASRLYLQTGSAGAAAGDMATEIERLKTAIKTLSPAATKYRRELGVTEIDGVPSGLLEELDTLSLLVYVPEIMRIAESAG-AESYATVSSTFRVARLLDASQRITPADHYESLALLRSQDQISSSRRRIVISALTEYAKEKWYAADRVRVNRIVSELGALSESGDTN--LARLTVAAGLLGDIVQAR... 1585
8 -7.730[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  80...................SIDDEEAKQFRESVVEWLMT-NHPVCEEGGNCHLQDMTVMTSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGADNVYFGRPEDGTLESEFSGNLVEIC-VFTDKTHSERYNRKW-SICQQCSIGCNISPGERYGEL--------RIERYNGTVNHYFLCDRGRFG----YGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQS---------------KKVIGIGSPRASVESNFALRELVGEENFYTGIAHGEQERLQLALKVLREGGIYTPAREIESYDAVLVLGEDVTQTG---RVALAVRQAVKGKAREMAAAQK-WQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQSKID-------VIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVVLENDLHRSATRVNAALAKAPLV--VVDHQRTAIMENAHLVLSAASFAESDGTVINNEGRA--------------QRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVID-AVVAKIPELAGIKDAAPDATFRIQPQDIDTMFTFSMEGNNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLF-SENGLDYFTSVPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQCRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ.......................................................................................................................................................................................... 910
9 -7.490[O] KOG0959 N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily  ali follow..  1..MTIAESSQKSATRKPDSMEPILRLNNIEKSLQDTRDYRGLQLENGLKVLLISDPNTDVSAAGLAHFCELFLGTEKYPHE-NGYTTYLSQS-----GGSSN-----AATYPLMTHFHV----------APDKLDGALDRFAQFFIAP--------------------TPSATEREINAVNSE--HEKNLPSDLWRIKQAKPDHAYSK--FGSGNKTTLSEIPKSKNIDVRDELLKFHKQWYSANIMCLAVIGKESLDE---LEGMVL---------------EKFSEIENKNVKVPGWPRHPYAEERYGQKVKIVPIKDRSLTISFTTDDTHLIGHEGKGSILSELRRLGTQNGFGFFDIVVDLTQEGLEHVDDIVKIVFQYLE-RKEGPKKWIFDECVKLNEM-EQPENLVTHAVSSMQIPLEEVLIAPYLSNEWRPDLIKGLLDELVPSKSRIVIVSQSFEPDCDLAEP----KTKYGITRVAKDTVQSWENCELNENLKLALPNSFIPTNFDISDVP-----------ADAPKHPTIILDTPILRVWHKQDNQFNKPKACMTFDSNPIAYLDPLNCNLNHMMVMLLKDQLNEYLYDAELASLKLSVMGKSCG-------IDFTIR---------SDKQVVLLEKLLDHLFDFSIDEKRFDILKEEYVRSLKNFKAEQPYQHSIYYL--ALLLTENAWANMELL----DAMELVTYDRVLNTECFIFGNVTKQQATDIAGRVNTRLEATNASKLPILARQMLKKREYKLLAGDSYLFEKENEFHKSSCAQLYLQCGAQTDHTNIMVNLVSQVLSEPCYDCLRTKEQL-GYIVFSGVRKVNGANG-IRIIVQSAKHPSYVEDRIENFLQTYLQV--IEDMPLDEFERHKEALAVKKLEKPKTIFQQFSQFYGEIAMQTYHFEREEAEVAILRKISKADFVDYFKKFIAKDGEERRVLSVHIVSQQTDENATSEAEPVEITNMERHKPISDIVT.......................................... 964
10 -7.490[DK] COG5103 Cell division control protein, negative regulator of transcription  ali follow..  232.IEKKLANSRPLTALFGPMKASKATLKSMKEAILKKYPPGTATETDVAYLI-----SLVAIHDYGAWDTVLMGKAIVSSFENLNWEAMLSM------------FDNPKFMITGTPSLVLF-----QTNFTLDFLWVLWRIISHIILSPTSMFDIRSLKDYSEELVNYAKIYEKSNLNCIELVQILLRLLSEVVTYELGTLQLPLAWNPVQESLAFQWCSDFFSNFKEHKFVRIERTFLRSLWLKDSSSVNQV----VEFIIENDFTSHIGNIQPNRFALEIAA-LAAARKALSFQDWLDKKMLEFEDADGLNVFLVEVLDFLMSRAALQKNESEQKEESVVLSIDTVLLTTLMDNVSISEEVSEHIKDVQILCLQVYPDSIVIATNTTNSFSPDVESEVESYFQALYERRISIGKIVLTLQNFKKSENPRDLDLSLFDEY-YPLEALALTAVLFGSLIQFELLSFV---------------------------------------PLGVALRYVYQALLMPTDSKMFRFGMQALVQFQEKLPKYINYCNLILGIPSLQLRPDIYDSIREMIASNENTEVEKDKLDSFSALANPASPKAPEYTFVSIHVPPLNVPNAEGEIEESVCDNI-----LFAINNLSQLNFNEKLVKDNLTPAYLPWFSHYIVTQRVSREANFLSLYFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKNLGSWLGSTLLRNKPITTLQVSFKD-------LLLEGIDSGRIDRVLPFVCKV------------------LEKASSSVIPNPWLMGILKLLVELYQFADFREIELLLNNLNVKMDNIEPSEMYRNHLVQKADLEKELPEDVLNAEFPDGTDVITQYIVAASSQITVTDAVAQVFGKPKPAIKNITQLIIQQSVLEIISAVVRRSVGIAAITTKSLNPSRLLLAARQMAKTLAGNLAMVTCREPLQMLMINNFRTIALQDVENVHAAQAIDELVSQNLFVASSVIESVASETAIAEIDAEIEHMIVERVRH... 1271

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.