current user: public
If you have questions about the server, please let us know.

Query: gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655], from E.coli

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQVLast
1 -10.300PF13099.6; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)  ali follow..  28  1....YIDDPDLEFLGKLSSAELEDIFRCIVYDKDNTKRW...................................................................................................................................................................................................... 35
2 -7.360PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin  ali follow..  12  6............TYRKIKQDDFELLLEYLDTEEAVKSESLEPYKTNNNHTIFKISSIYKDETT------LTQYANQTI--LLQGRPLYYNVIKSFINELIDFDYKIDLKPDVVREEL-ESRLFAVYGRFDEKILKVMTPAL................................................................................................ 135
3 -6.250PF05823.12; Q9XUB7_CAEEL/32-181; Nematode fatty acid retinoid binding protein (Gp-FAR-1)  ali follow..  8  5...ELIPAKVTEYLKSITTEEKAAIKEFIKSVMGGNKSVEELSADIK--ERSPSLYAKVEKLDVLLRTKLAKLDPAA------------LALFGKVIAQGLSFRQQFHAGYQPTPEMVKKLFKGEYKTLSENAKATITDEF................................................................................................ 131
4 -6.120PF03250.14; G1T4H0_RABIT/5-146; Tropomodulin  ali follow..  12  7...KYKDLDEDELLGNLSEVELKQLETVLDDLDPENALLPAGFRQKNQTSKSATGPFDREHLLSYLEKEALE----------HKDREDYVPYTGEKKGKIFIPKQKPVQTFAEENISLDPELEEALTSATDTELCDLAAILGM.............................................................................................. 136
5 -6.060PF09730.9; H3DKP7_TETNG/4-712; Microtubule-associated protein Bicaudal-D  ali follow..  18  587..........LKSLLSTKREQIATLRTVLKANKQ-----TAEVALANLKSKYENEKAMVTETMMKLRNELKGLKEDSLRAMFATRCDEYVMQLEEMQRQL--------TAAEDEKKTLNSLL-----RMAIQQKLALTQRLE............................................................................................... 705
6 -5.900PF03153.13; U4LM67_PYROM/9-393; Transcription factor IIA, alpha/beta subunit  ali follow..  15  2........................................................................................YSSIIEEVINSSRIDFEEA-----INASTLDDL-KAVWRKLSGLKIAQ..................................................................................................... 45
7 -5.850PF04468.12; J7ITW5_DESMD/61-146; PSP1 C-terminal conserved region  ali follow..  11  2...........QVMRKATLADELFVEQ-------------NRLKEKDAFQICLKKISEHHLPMKLVDVEYTFDGNKIIFSFTAEGRVDFRELVKDLAAIFRTRI..................................................................................................................................... 81
8 -5.760PF06003.12; F7AWW9_XENTR/27-291; Survival motor neuron protein (SMN)  ali follow..  13  9.......DD--TALIKAYDKAVSSFKKAL---KNGDCTVSAEAEEKIPRTKRKNNKKNRSRKKCNAAPLKKWRVGDTCNAIWSEDGNIYPATISSIKGTCIVVYSGYGNSEEQSLADLRFPDTSEAESDQREQGQELNGD................................................................................................. 139
9 -5.670PF09037.10; Q0SH97_RHOJR/6-259; Stf0 sulphotransferase  ali follow..  13  128........GDLAFIHVYRRDVVAQAVSMWRAVQTQVWRDDATPPAPHDGAEYH---------AGGIAHLVRILRDEQWRNWFEVEGIGFDDLVAAVLVELGLDADLAPPPP----------LKRQSDGRSKEWAERYLSD................................................................................................. 254
10 -5.590PF09537.10; A4XUK4_PSEMY/9-119; Domain of unknown function (DUF2383 topsan)  ali follow..  13  4...................RTLNKLIETCKDGEAGFKVCAEDIKRPDIKQLFTQRARQCGEAAAELQRVVLEFGGESISADLHRRWVDLKSLVTGKDEEAILN-----EAERGEDVAKER-YSEALSK............................................................................................................. 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 3 0 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.