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Query: gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLAEDRCKKILDILDSMGSVTVQQLMDELDTSESTIRRDLVAMDKKGYLTKVHGGAIVNNTNIHTQDEKVINRLKQNRNEKEQIARYAASLIVDNDFVYIDAGTTTAVMIDYITAKNVVFVTNSLTNAKRISDRGYTVYILGGEFKSTTEAIVGDEAVVTLDKYNFTKGFWGTNGITVKNGFTTPEIKEAMVKKKSMENSKEKYILADDSKFSQVSSIKFADFEDAVIITNALSNDNYKKYKNIKEVLast
1 -80.500IDP00219 probable deoR-family transcriptional regulatory protein YPO1938 [Yersinia pestis CO92]  ali follow..  23  1MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRL--AIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIYLDAGTTTLALARQLEDDDLLVVTNDFVIANFLIESQCRMIHSGGTLCRKNRSCIGEAAAHSLRNLSIDIAFISASCWGLR-GISTPDEDKVPVKRAISEASSKRVLLADASKYGKVATYLALPLTAFDVITDNSLSSTVYEELAEKAL 247
2 -79.600IDP00414 gene: deoR; DNA-binding transcriptional repressor YPO1322 [Yersinia pestis CO92]  ali follow..  24  3TRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVILLGGYVVMDPKSNN--ANNYFVSDQQAKQVEEKRRIGQLAAQLIIENDTVFFDCGTTIPWIIDEIDEEAFTAICYSLNTFLALQDPNCKVILCGGEFKPNNCIFTPLSQQSELDNICPNKAFISAAGVSIEYGATCFNFDEILLKHRAMAKSQYKILVADHSKFGKIKPASIGTLAQFDLVTDRPPVAEFYLFFSQHSV 250
3 -16.700IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  5.......IQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEP............................................................................................................................................................................................... 53
4 -14.300IDP90978 hypothetical protein y0549 [Yersinia pestis KIM 10] y0549 [Yersinia pestis KIM10+]  ali follow..  23  8....FRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALKELRET......................................................................................................................................................................................................... 49
5 -14.100IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  6..VFARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDG............................................................................................................................................................................................... 59
6 -13.300IDP02119 gene: rpiA; ribose-5-phosphate isomerase A [Francisella tularensis subsp. tularensis SCHU S4] FTT1208 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  2.....................................................................FFNKKNNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNKIKTVVSSSEDSTRKLKALGFDVVDLN-------------------YAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKK................................... 128
7 -12.400IDP93833 DNA-binding transcriptional repressor ArsR [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007538 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  29  11NLSDETRLGIVLLLKEMGELCVCDLCTALDESQPKISRHLAMLRESGLLLDRKQG................................................................................................................................................................................................ 65
8 -10.200IDP00724 gene: arsR; arsenical resistance operon repressor SACOL1822 [Staphylococcus aureus subsp. aureus COL]  ali follow..  25  12VLSDSSRLEILDLL-SCGELCACDLLAHFQFSQPTLSYHMKALVKTNLVTTRKIG................................................................................................................................................................................................ 65
9 -10.200IDP90948 gene: mga; trans-acting positive regulator [Streptococcus pyogenes MGAS5005] M5005_Spy_1720 [Streptococcus pyogenes MGAS5005]  ali follow..  13  10..QQWRELKLISYVTENADVKDKELSKALNISMLTLQTCLTNMQEVGGITYKNGYITIWYHQHCGLQEVYQK--------RHSQSFKLLETLFFRDFNSLEELAEELFVSLSTLKRLIKKTNAYLMHTFGITILTSPVQVSGDEHQ..................................................................................................... 153
10 -10.100IDP92040 ribose 5-phosphate isomerase, putative [Toxoplasma gondii ME49] TGME49_039310 [Toxoplasma gondii ME49]  ali follow..  16  6..............................................................................KAKQAVGYFAVTYVRSGMKVGLGTGTTAKFVVERIGQRDLLCVPTSEATRKQAESLGIPLTTLDGIAD------------------CLDVAIDGADEILPPTLGLVKGRGGALLREKMIAAAKTFIVAADETKL................................... 130
11 -9.890IDP02193 arsenical restistance operon repressor [Francisella tularensis subsp. tularensis SCHU S4] FTT0868c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  12ALGDETRIRILMVI-YQHQLCLCHLAHIFKLANSTLSKHLDILRRNGFIHKRKQG................................................................................................................................................................................................ 65
12 -9.020IDP04039 gene: spoIIID; stage III sporulation protein D [Clostridium perfringens ATCC 13124] CPF_2446 [Clostridium perfringens ATCC 13124]  ali follow..  18  6...EERVLEVAQYIIYSR-ATIRKTAKVFGVSKSTIHKDMTELDLNKAERHIRGGKATKLK.......................................................................................................................................................................................... 78
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;