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Query: gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLYENGAYLLNGKEVIIDGPEAQAAVKSKTGMDIDKQTAKQETIAYGILKEHNTSGNMDKLQIKFDKLTSHDITFVGIIQTARASGLEKFPIPYVLTNCHNSLCAVGGTINEDDHMFGLTCAKKYGGIYVPPHQAVIHQFAREMLAGGGKMILGSDSHTRYGALGTMAVGEGGPELVKQLLEQTYDIDMPEVVGIYLTGEPIKGVGPQDVALAIIGEVFGNGFVKNKVMEFVGPGVSNLSVDFRIGVDVMTTETTCLSSIWRTDDQVKEFFEIHGRAEDHKELNPGEVAYYDRFIEIDLSQIRPMIAMPFHPSNTYTIDELNANLMDILDDCEKRAEVSFDGKVKLDLKSKVRDGKLYVDQGIIAGCAGGGFENICDAADILNGHSIGADEFTLSVYPASTPIYMELVKNGAVAKLLETGAIVKTAFCGPCFGAGDTPANNAFSIRHSTRNFPNREGSKVQNGQISSVALMDARSIAATAANKGFLTSAADIDVNFTKPKYFFDKTIYENRVFDSHGVADPSVEIQFGPNIKDWPAMSALPENMLLKVVSEIHDPVTTTDELIPSGETSSYRSNPLGLAEFALSRKDPEYVGRAKEIQKAQKAIESGECAGKAVPEVAEIMGVVKKKFPEASHENMGFGSTIFAVKPGDGSAREQAASCQKVLGGWANIANEYATKRYRSNLINWGMLPFIIDEGELPFHNLDYIFLPGIKKEIEDAKTEFEAYVVKDGELKPFTLKMGELTDDEREIILKGCLINYNRKLast
1 -150.000IDP02220 gene: acnA; aconitate hydratase [Yersinia pestis CO92] YPO2221 [Yersinia pestis CO92]  ali follow..  18  25.........LPQLAAVLGDINRLPKSLKVLLENLLRHLD--GVQVQEADLKAIVAGHADREIAYRPARVLMQDFTGVPAVVDLAAMREAQVNPLSPVDLVIDHSVTVDEERNHERYIFLRWGQKAFSFRVVPPGTGICHQVNLEKQVAYPDTLVGTDSHTTMNGLGILGWGVGGIEAEAAMLGQPISMLIPDVVGFKMTGKMREGITATDLVLTVTQMLRKHGVV-GKFVEFYGDGLADLPLADRATIANMSPEFGATCGFFPVDEVTLNYMRLSGRSNEQIARYPGDEPVFTSQLSLDLSSVEPSLAGPKRPQDRVALPKVPSAFKAFEELEFNNKRDKADLVAFSLNGKTHELASGAVVIAAITSCTNTSNPSVLMAAGLLAKKATEKPWVKTSLAPGSKVVTEYLNSAGLTRYLDNLGFNLVGYGCTTCIGNSGPLPEPVSAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNIDLTQDALGHRKEYAEVFNGDENWQAIQIESTPTYAWQKDSTYIRLPPFFTDMKAVPDPVQDIHDARILAILADSVTTDHISPAGNIKLDSPAGRYLRDHGVEIKEFNSYGSRRGNHKVMMRIRNEMVPGIEGGITRHIPSQNEMPIYDAAMRYQQENAVIAGKEYGSGSSRDWAAKGPRLLGVRVVITESFE-RIHRSNLIGMGILPLEFPQGVDRLTGDESISVSGL-QNLAPGQMVPVTITYADGHQQVVNTRCRIDTGNELIYFENGGILHYVIR 887
2 -149.000IDP02744 gene: acnA; aconitate hydratase [Francisella tularensis subsp. tularensis SCHU S4] FTT0087 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  34..................DVTRLPYSIRVLLENQLRNIDKVKEDDMHKVLDWDAKASSRPEIPHMPARVVMQDFTGVPAVVDLAAMRKAKINPLVDTAMVIDHSVQVEFERNGERYSLLKWAQKAFDFIVVPPGMGIIHQVNLEEDVIYPDTLVGTDSHTTMNGVGVVGWGVGGIEAEAVMLGQPYYMVLPDVVGVKFTGKLKTGVTATDLVLKVTEVLRKHGVV-GKFVEYYGEGLESLSLPDRATIANMAPEYGATIGFFPVDEVTLDFFNNTNRSELLFRENPAEEPEYSSIVEIDLSEVESNLAGPKRPQDRVAFHDMKKAFAEALVHEQGLHGFGLTQKLAEVKGLNERITHGSVAIAAITSCTNTSNPSLLLGAGLLAKKANEKPFVKTSLAPGSQVVTQYLEKANLLPELENLGFNLVGYGCTTCIGNSGPLDEPVASVSSGNRNFEGRINPHVKANYLASPIHVVAYALAGTVDFDGNDVYLADIWPTTEEIAAIQSHVINSDMFKKAYEFDSSSTYIQCPNFFEKFAEG-NDDLDIKGARTLLMLGDSVTTDHISPAGAIPEEYPAGQYLKSHGVEKKDFNSYGSRRGNHEVMMRIRNLLLDNVEGGFTKYHLDGSQQYVFDAAMKYKEKGVILAGKEYGTGSSRDWAAKGTFLLGVKAVIAESYE-RIHRSNLVGMGVLPLEYVNGQNGLDGTEMFNIKNLNNIKPRQIVIVEAVHPKTAHTTTFEALARLDADVDVDYLKNGGILQTVLK 892
3 -148.000IDP01963 gene: acnA; aconitate hydratase [Salmonella typhimurium LT2] STM1712 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  25.........LPLAAKSLGDIARLPKSLKVLLENLLRWQD--GESVTDEDIQALAGAHADREIAWRPARVLMQDFTGVPAVVDLAAMREAKVNPLSPVDLVIDHSVTVDHERNHERYMFLKWGKQAFSFSVVPPGTGICHQVNLGEWIAYPDSLVGTDSHTTMNGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLRKHG-VVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAITLEYMRLSGRSDDLVERNPGDEPVFTSTLELDMGDVEASLAGPKRPQDRVALGDVPKAFAASAELELNTAQRDRQPVDYTMNGQPYQLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTQPWVKASLAPGSKVVSDYLAQAKLTPYLDELGFNLVGYGCTTCIGNSGPLPEPVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNINLATDPLGYRKEYAEVFEGTEEWKSIQVESSDTYGWQSDSTYIRLSPFFDEMQAQPAPVKDIHGARILAMLGDSVTTDHISPAGSIKPDSPAGRYLQNHGVERKDFNSYGSRRGNHEVMMRIRNEMLPGVEGGMTRHLPGTEAMSIYDAAMLYQQEKAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESFE-RIHRSNLIGMGILPLEFPQGVTGLTGEEVIDIADL-QNLRPGATIPVTLTRSDGSKETVPCRCRIDTATELTYYQNDGILHYVIR 887
4 -107.000IDP00574 gene: leuC; isopropylmalate isomerase large subunit YPO0531 [Yersinia pestis CO92]  ali follow..  20  1..................................MGTTSSQSKTLYQKLYDAHIVEAPNETPLLYIDRHLVHEVTSPQAFDGLRAMG-RPVRQPGKTFATMDHNVSTQTKDIRIQMQELIKNCAEFGVSLYHPFQGIVHVIGPEGMTLPGMTIVCGDSHTTHGAFGSLAFGIGTSEVEHVLATQTLKQGRAKTMRIEVNGTVGAGITAKDIVLAIIGKTGSAG-GTGHVVEFCGSAIEALSMEGRMTLCNMAIEMGAKAGLVAPDDTTFAYLKGRQFAPTWRTLKSDADAQFDTIVTLDAADIAPQVTWGTNPGQVIAVNQIIPAPESFSDPVERASAEKALAY--MDLRPGIKLTEVAIDKVFIGSCTNSRIEDLRAAAAIAQGRKV-AKGVQAIVVPGSGPVKAQAEAEGLDKIFIAAGFEWRLPGCSMCLAMNDRLEPGERCASTSNRNFEGRQGR-GGRTHLVSPAMAAAAAVSGHFADVRELSATTH............................................................................................................................................................................................................................................................................. 476
5 -105.000IDP02652 gene: leuC; isopropylmalate isomerase large subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA1422 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  20  1........................................MGKRLLDKLWERHVVTTNNGLDLLYIDLHLVHEVTSPQAFEGLRLTN-RTVRRPDLTFATMDHNIPTKDVWNITQLDTLRENCKQFQVPLADEEQGIVHVIGPEGLTQPGKTIVCGDSHTTHGAFGALAFGIGTSEVEHVLATQTLWQRKPKAMGIELKGKLQKGVYAKDIILHLLSKYGVAV-GTGYVMEFYGETIGTMEMEERMTLCNMAIEGGAKAGIIAPDEKTFAYVKGRKYAPRWFELYTDADAIYDLHISIDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDE---------RAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASVVKGRKV-KEGVRALVVPGSKRVRDAAMQKGLHHIFEEAGFEWREPGCSMCLGMNDQVPEGEHCASTSNRNFEGRQGK-GARTHLVSPAMAAAAALYGHFVDIRKE.................................................................................................................................................................................................................................................................................. 455
6 -30.300IDP90790 gene: leuD; isopropylmalate isomerase small subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1716c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  18  5...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IIHKGIACPLEYANIDTDQIIPKQFLLAVSKQ--GFGKHLFHDLRYLDDKESVLN----------------------------MDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFA-DIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEI----SLLEKRVFFKDKIFSFDL-----DDFHRICLLEGL....... 175
7 -7.140IDP91981 serine protease [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000172 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  7  112...........TDSFVNKNTENPKKEDKVVYIAEFKDKESGEKAIKQKVLYTYDRIFNGSAIETTPD-----NLDKIKQIEGITSVERAQKVQPMMNHARKEIGVEEAIDYLKSINAPFGKNFDGRGMVISNIDTGT-HKAM-KNYWLSDKIPHAFNPHGMHIA-GILA---GNDTEQDIKNFNGIDGIAPQIFSYKMYSDAGSGFAGDETMFHAIEDSIKHNV----VVSVSGFTGTGLVGEKYWQAIRALRKAGIPMVVATGNYATSASSSSWDLVANNHLKMTDTGN----------------VTRTAAHEDAIAVASAKNQTVEFDESFKYRNIGAFFDKNKITTNEDGTKAPSKLKFVYIGKGQDQDLIGLDLRGKIA------------VMDRIYKNAFKKAMDKG------ARAIMVVNTVNYY-LPAMGYEADEGTKSQVFS--ISGDDGVKLWNMINPDKKTEVKRNNKEDFKDKLEQYYPIDMESFNSNKPNVGDEKEIDFKFAPDTDKELYKEDIIVPAGSTSWGPRI---------------DLLLKPDVSAPGKNIKSTLNVINGKSTYGYMSGTSMATPIVAASTVLIRPKLKGDDKIDLTSLTKIALQNTARPMMDATSWKEKSQYFASPRQQGAGLINVANALRNEVISLKEIKGDKKYFTIKLHNTVSASAVTTDSLTDRLKLDEDGKQIVPEIHPEKVKGANITFTFTIGANSSFDLNAVINVGEAKNKNKFVESFI...... 909
8 -6.210IDP00910 gene: mrcB; penicillin-binding protein 1b STM0190 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  69................................................................................................................................................................................IVFVVLFAIYGVYLDQKIRSRIDGKLPAAVYGRMVNLEPDMPVSKNEMV--KLLEATQRLVTKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFSDGRLETIVNLDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAV-LANLTAGRTVQGAST---TQQLVKNLFLSSERSYWRKANEAYM---ALIMDARYSKDRILELYMNE------------LGQSG--DNEIRGFPLASLYYFGRP--------VEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQKIIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDKIKDLSGV---KIFTTFDSVAQDAAEKAVVEGIPALKKQRKLSDLETAMVV-------------------------VDRFSGEVRAMVGGAEPQYAG--NRAMQARRSIGAKPATGQVWSPQNDDRRYSESGKVMLV--------ALTRSMNVPTVNLGMALGLPAVTDTWTKLGPVPAMLLGALNLTPIEVQTIASGGN...... 628
9 -6.210IDP92675 ribonuclease E [Vibrio cholerae O395] YP_001217556 [Vibrio cholerae O395]  ali follow..  9  89................................................................................................................................DVLNEGQEVIVQIEKEEISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSS----LELPQGMGL-IVRTAGVGKSAEELLLKHWSAIKQANVIVRAIRDYLRRDIGEILIDSNSIIRLVRPDFVNRVKKYEGEVPLFSHFQ----------IESQIESAFQREVRLPIDPTEALTSIDINSARATKGGDIEETALN----------TNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR----EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHI----CPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIASYLLN........................................................................................................................................................................................................................................................................................... 449
10 -6.020IDP90945 hypothetical protein VP0092 [Vibrio parahaemolyticus RIMD 2210633] VP0092 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  12  376........................................................................................................VFEDISVRKAHEEKLQRMAFYDPLTNLPNRTHLISLLHIEMEQPFATLFLDIDHFKHIN--DSMGHFCGDQLLSKLAVRLQDILHLNAHVA-RIGG---------DEFVIVLPDIDGDSPLLETLSSILGVFRRPFDLANHDSL-RISTSIG--IALYPNDGQDSETLLKNADTAMYLAKKNGRNGVYQPQYNLAQNAIEALVRWEHPPADFIPIAEKTGLIQNIGEWVLKDACLQGTD-----LARGVQFGKIAVN---VSALQLQQSRFINKLKTILRETGFPAHRLELEITE-SFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPINKLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEG.................................................................................................................................................................................................................................................................................... 777
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;