current user: public
If you have questions about the server, please let us know.

Query: gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370
# Score Template Links and tools%idFirst MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIEERGIIALDAKIFSEIVRKLPDNDVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHYDSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVSRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVIDEEEVNLYMVNPKAPCFIKDDEGKFIYLILPVNFNTAANLast
1 -12.100sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1  ali follow..  11  5.......................................................................................................................................RLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEASDYEMKLMDLDVEQLG-IPEQEYSCVVKMPSGEFARICRDLSHIGDA-----VVISCAKDGVKFSASGELGNGNEEAVTIEMNEPVQLTFALRYLNFFTKATPSSTVTLSMSAD-VPLVVEADMGHLKYYLAPKIEDEEGS 261
2 -9.320sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2  ali follow..  13  3.............................................................................................................................KCVMSGSQVK-VFGKAVQALSR-----ISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVTLHLKCKLGMKSILPIFRCLNSLERNRIFTRSDKCKVVIQFFYRHGIKRTHNICFQESQPL-KNVCTNTLMIQPRLLADAIVLFTSSQEE-----VTLAVTPLNFCLKSSNEESMVHSEMFVGSDGMDTEITFCFKELKGILTFSEHAPISIYFDFPGKPLALSIDDMLVEANFILATLADEQS 278
3 -7.540sp|Q99638|RAD9A_HUMAN Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1  ali follow..  11  2.............................................................................................................................KCLVTGGNVK-VLGKAVHSLSR-----IGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISSSRLVVQLHCKFGVRKTHNLSFQDCESL-PASCPHMLRAPARVLGEAVLPFSPALAE-----VTLGIGRGRRVILRSTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAENLNLSIHFDAPGRPAIFTIKDSLL-FVLATLSDTDSHS 272
4 -5.880sp|O60671|RAD1_HUMAN Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1  ali follow..  10  23.................................................................................................................................NVRNLSTILKAIHFR---EHATCFATGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEV----QITMSPDKPYFRLSTFGNAGSSHLDYPKDSDNQTQVNRYKISLLKPSTKALVSCKVSIRTDNRGFLSLIRNEDGQICFVCCPDEEVPESE 281
5 -5.150sp|P51805|PLXA3_HUMAN(removed signalp:1-19) Plexin-A3 OS=Homo sapiens GN=PLXNA3 PE=1 SV=2  ali   8  16...........................PTFDQV--ASGGTRLTISGSSLDAGSRVTVTVRDSECQFVRRDAKAIVCISPLSTLGPSQAPI----TLAIDRANISSPGLIYTYTQDPTVTRLEPTW------------------SIINGSTAITVSGTHLLTVQEPRVRAKYRGIETTNTCQVIND--TAMLCKAPGIFLGRPQPRAQGEHPDEFGFLLDHVQTARSLNRSSFT--------PSFEPLGPSKPGSHVVLKGKNLIPAAAGSSRLNYTVLIGGQPCSLTVSDTQLLCDSPSQTGRQPVMVLVGGLEFWLG-TLHISAERALTLP...................................... 300
6 -5.110sp|P23467|PTPRB_HUMAN(removed signalp:1-22) Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3  ali   11  87..ITTESEPLFGAIEGVSAGLFLIGMLVAVVALLICRQKVSHGRERPSARLSIRRDRPLSVHLNLGQKGNRKTSCPIINQFEGHFMKLQADSNYLLS---------------KEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPG--------TKDDFWKMVWEQNVHNI----------------VMVTQCVEKGRVKCDHYWPADQDS.................................................................................................................... 300
7 -5.000sp|O75051|PLXA2_HUMAN(removed signalp:1-34) Plexin-A2 OS=Homo sapiens GN=PLXNA2 PE=1 SV=4  ali   8  20...........................PSVLSL--ESGGTMVTITGHYLGAGSSVAVYLGNQTCEFYGRSMSEIVCVSPPSSNGLGPVPVSVSVDRAHVDSNLQFEYID------PRVQRIEPEW------------------SIASGHTPLTITGFNLDVIQEPRIRVKFNGKESVNVCKVVNT--TTLTCLAPSLTTDYRPGLDTVERPDEFGFVFNNVQSLLIYNDTKFI--------PTFELLSPTKPGSPIILKGKNLCPPASGGAKLNYTVLIGETPCAVTVSETQLLCEPPNLTGQHKVMVHVGGMVFSPG-SVSVISDSL.......................................... 299
8 -4.710sp|Q9UIW2|PLXA1_HUMAN(removed signalp:1-26) Plexin-A1 OS=Homo sapiens GN=PLXNA1 PE=1 SV=3  ali   8  35...........................PTFYRV--LSGGTWIGIEGSHLNAGSDVAVSV-----GGRPCSFSWRNSREIRCLTPPGQSPGSAPIIININRAQLTNPEVKYNYTEDPTILRIDPEW------------------SINSGGTLLTVTGTNLATVREPRIRAKYGGIERENGCLVYND--TTMVCRAPSVANPVRSPPELGERPDELGFVMDNVRSLLVLNSTSFL--------PVLEPLSPTKPSSPLILKGRNLLPPAPGNSRLNYTVLIGSTPCTLTVSETQLLCEAPNLTGQHKVTVRAGG.......................................................... 299
9 -4.650sp|Q5SZK8|FREM2_HUMAN(removed signalp:1-46) FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2  ali   8  21..................................................................................TDQFTFRVQDNHDPPNQSGLQRFVIRIHPVDRLPPELGSGCPLRMVVQESQLTPLRKKWLRYTDLDTDDRELRTDENHLPAPLGTLVLTDNPSVVVTHFTQAQINHHKIAYRPPGQELG-----VATRVAQFQFQVEDRAGNVAPGTFTL-------------YLHPVDNQPPEILNTGFTIQEKGHHILSETELHVNDVDTDVAHISFTLTQAPKHGHMRVSGQILHVGGLFHLE-RVSYAHNG-DKSLTDSCSLEVSDRHHVVNVRPVDDEVPILSHP........ 300
10 -4.630sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=2  ali   11  80..........................................................................................................................................RGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFD-EDTRIKFLTDGMLLREAISDSLLRKYSCVILDEAHER-TIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDIL..................... 292
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.