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Query: gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKVMEKWNEILQMVKEEHGLTDVSFNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKVAIGEVTGIEYDIQFILPDQAQSLKFKNNDTPQLEQQTPVKGDHSNLNPNYTFDTFVVGNNNRFAHSASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPDKPREITAQLIIEVVSEHFHISVDQMISKTRSSEIARPRQIAMYLCKTMTSDSLDVIGQLLGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKINPNLast
1 -3.420PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  11  70..............................................................................................................KAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQAPSASGKGILVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMF------LISGNN--------TGTGI---LQNIMDSDGTGLICEA----EADTLSTAIGS--DHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFDGSYSRQLYYNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCR-------------------MSEVAVLRALESPQPYDFKTSPTSP......... 394
2 -3.040HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  10  1..........................................................................................................................................................................MSREKRKAKKEAEKRLSTRQFIG-AKEITDYSLVTYGQGE--LVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQME-----PVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQNVTTE............................................................................................... 184
3 -2.850PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  12  12.................................................................................................................................................................LVLTMCSAFSLKKGHSKTVYA-AASFTDTVV-------------YFTDIQILDSAKVSKEGFLTHRDLYSYQL-YVEDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRNTTVT.............................................................................................................................................................................. 119
4 -2.340PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  15  2..................................................................................................................................VCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEV--------EAPKDSVKYQFNLTREQQATNRSKL------------REAKLLRENRIESYYDEALAENVPDAKEILHLAKGNF-----MEIYRFL-TVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSF........................................................... 239
5 -2.280PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  8  1.........................................................................................................................................................................................................................MTDSLFWA------KNQFHGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANL--SIVNRTRPCGRNLYLLWQQHHTDLAQRLNN--LNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRT-----LLHKAGYKDDADCEGMLLELRSR--SFPHEIGLFI-----GYPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGA. 226
6 -2.100PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  10  3...............................................................................................................NFKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNC-FGKFAIVKKVYEVNDGFNIGSGL----LAKFIKTLVMYFPFSILYFVGFF------FDLILFNLIEFWSGNNPVGYN--KYVKAYEENGEKLLLSYSDFGKRLDIQFAK............................................................................................................................................................................................ 149
7 -2.030PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  12  32.......................................................................................................................RGFYCTRSIELAKEWACAGLDDGFANRYTL---------TTDGLTFLDLSQPPYTILNWLALLVENRRFQPTTAVAAQGIEYLRQVFLPDISQADVIRADDARTFVNNAISLDQLADAMR-LGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRD----IIREKVTND......................................................................................................................................... 222
8 -1.880HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  9  10.........................................................................................................................................................................................................................................................................................RMKEEDNILKKVGKKNSFKVPEGYFENLTSEVMGKLPEKEYMAAMFIGAALIIRVASSNHQPTTAGDHLTANEAATEVVSDEYIDVALDRSMLDDYSLSVYLSDATA................................................................. 136
9 -1.810HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  8  8..........................................................................................................................VKLWGESVGSLYWEKESNAALFDYERKFIRSGLDISPIIMNTPYRFLENRTDCFKGLPGLFADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCMGALEFEPSSPINGMN---HIEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVG.................................................................................................................................................................................... 172
10 -1.810PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  10  124.................................................................................................................................................................................................................FDGAKLLIAADCTAYA---------YASFHEKFIKGHVTLIGC--PKLDSVDYSEKLTEIIRRNTIVRMEVPCCGGLEMAAKKALQDSGKFIP----------WQVATISIDGRIL................................................................................................................................ 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.