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Query: gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIEERGIIALDAKIFSEIVRKLPDNDVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHYDSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVSRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVIDEEEVNLYMVNPKAPCFIKDDEGKFIYLILPVNFNTAANLast
1 -4.700PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  8  45......SQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDD-SNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVDLSMLSD--------------------TFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEARSNEKLNREHVLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGED-----------AGKVDGS--SVLQWISFADPANPTLDTSQISSWAAELA--GFNTVGSTRWWTRADGKQC------------AVEGGDFGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK........................... 362
2 -3.530PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  9  2.........................SVSWIAGAEYQLFKKNLLLAVRDYAEGYYSPFAGAFAERGDGGSNERGVY----------LGIDAALSSKVSVGAYYDWFRFPKLDSKDYPY-PSSGYDTRFFLDWKQSRAVTWTLQLQHKEKEVALKQCPDGAGSCDEEEELYAPLGKVTDRVRLDCDIDALRKLTLRTRGEVKRVVKEYLAGDESCYGWLVYQQ-AGYKAGKFGLKGRFTIFNTDDYDSIYVYEDDLPLVFNSTGFNGRGKAFFILGTWDVTKNLKLAGKFETTWYDDREVYGDSTDQRNTSAPGT-FHFG.................................................... 283
3 -2.770PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  5  45..............................................................................................................................................................................RLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQI--VQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLLPYSDS----FQGT......................................................... 195
4 -2.730PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  7  14...............................................................................SIKDSRFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDILFEDHI---KAGFWKSITVGFKNTQFSLIPEALFEKDYLK----------------EYLTLNTTLDREPDEEYHFYKQRQTEAVNVFATNQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTFNTSEDFV----------------FILFVFDQLNPEKCPVVVFGEIT......................... 249
5 -2.700HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  7  15...............................................................................................................................................................................LFLVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQ-GGKWVRSEFDVTKD---YQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYV--EFDEPDSELLINFDGT......................................................... 161
6 -2.570PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  9  12........................................................................................................................................LAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQY-----SYKENVQLNLEHQLVKFRVKLNGDVPNLS--------------DAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSN.. 230
7 -2.340PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  10  1....................................................................................................................................................................................................SVLDGFEAVGEKTTTNKMTMTVMESSVRFSKGVTEALGC------PAYVKLLVNDKQKKIAVQDAXDENAIKFCKTKRSKADGVDSDAAGKASSVTVRTTDVLVAVQKYFTFPPVADD-----IAYFAMDGESYPDEKVVIFAVADA........................... 139
8 -2.310PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  10  75...........................................................................................................................................................................................................................................................................ASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKLKTSGPMDFEAQNAFSEDQLEIKISGS........................... 151
9 -2.270PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  9  42.................................................................................................................................................................................................VTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDS-LKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAH------VVLSGNELTLLFNADKLLKFLSTVSS..................................... 179
10 -1.800PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  9  117.........................................................................................................................................................................................................................APVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL.............................................. 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.