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Query: gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIIKSIQLSNFRNYEKLDISFDTETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIRFGEDEAHIRTIVEKNDKEYRIDMHLRKNGAKGVAINKMPIKKASELFGILNIVFFSPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLIDTLQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLILKYEPSIDDIFFEDELLKARSRDLKLCQTTVGPHRDDMLFSVDGVDIRKYGSQGQQRTSALSLKLSEISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFVKNRFQVDKVFHVVKGQVEVIDELast
1 -3.540PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  10  18..................................................................................................................................................................................................................YICYSSIMGPINFEKAKKEREQAVIARLIDIRKAQQEYRSLHHGMYTDTLIDFVKNQKLPFVMKVGQLTDDQLESGLTEKKAMAIINKAKKTGKYDEVKKNGLENFKRDTMWVAVMDTIYPKGFNADSMKYIPYGNGAIFEMNVKNDTAKSG 172
2 -1.620PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  10  42.................................................................................................................................................................................................................................................................................................................DEIIADIEARIAELFYEKMENERQVITQKEVDAVIAIM................... 79
3 -1.580PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  9  70....................................................................................................................................................................................................VTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKR--------LDDAKTNLTAK--------LDEASKLLADSD........................... 192
4 -1.310PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  7  113..........................FVVAPSASGKGILSYIRLLVPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEA-----MPPNRMFLISGNNTGTGILQNIMD-TGLICEAEADTLSTAIGSDHGHWSDTLR----KAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAEDGSYSREIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVA---------------NGREMYSFVARLAVNLCRIMSEVAVLRALES................................................................... 381
5 -1.210PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  7  2..........................................................................................................................................MLSYVTPGFYDKSYVGKWMFQVMGLEYDKALKLETATWGLCWHEIKWVQENLSYQERRQAIYEKRDYIMERYLENATGFTVHIA............................................................................................................................................ 105
6 -1.200HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  10  9...............................................................................................................................................................................................................................................................NKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAENETGQVGLLRLAEVWSAIEGTEAKILSDVVAQFYAYLS.............................. 97
7 -1.020PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  13  1..........................................................................................................................................................................................................................................................................................MIRRSSEEVLQFSDMKSDSPDLKTAMLGRIRADEPRKVW-TPSDFVDLASRDAVDKTLQRLTKAEALRRIDRG....... 72
8 -0.997HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  9  6........TRYADCVNGVGNAASPVGAYASSTEWNYDN--EVAYGFGYGLSY-TTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNPGKTSVQIEGGLEKVAIQLLNFEKSSELAPGASEIVS---------------------LQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRAD----WAGTFPKTYDQMTLTSEKLISDLNGNYYTIATDDDTSDIKLMFYQMFGDFDDPKWDELLDKMTLEEALATYGGPSIPGVESIGTVETYMTENA....... 348
9 -0.993PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  14  1.........................................................................................................................................................................................................................................................................................MTVLSLKEVKLLMNDTQKNDLFYLIEFIGRKTKNRRSIIVQKLGKKELIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVES 89
10 -0.960PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  14  69.....................................................................................................................................................................................DNALKNVAGSLAATEAE--KKMKEYCAKV--GIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKLSTVSSISSNTTLKAINKLASEYD................................................. 197
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.