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Query: gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKEIQQNNQEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCKNIEVTIEEDNSITVQDDGRGIPVGTNHKAKKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTWLTVEVYKDGNIYRQSYKRGKTDDTVKIVGQCDESLHGTKVHFLPDPEIFEETVYDYDTLKQRLRETAFLTKGLKITLKDVRENSHHNHVFHYEGGIKEFVEYLNRGKEALYDEVIYCEGTQNGVYVEVALQHNDSFNDSTFSFVNNVITPEGGTHLAGFRNALTKTFNAYAREKKILKDSDPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDAVVSEKLTYFLEQNPDVAKNICEKSLLAQRAREAARKARDLTRRKTSLDGGTLPGKLADCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRIYDNAEIRAMITAFGTGIHEDFDITKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIKEGHVYLATPPLYKVEKNKGVWYAYDDDELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMDPDHRILKQVMIDGENSSELDVTFTTLMGDKVEPRKEFIEANAKYVTNLDILast
1 -2.900PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  11  59.......................................................................................................................................................................................................................................................................................................NDWPEFLQRIIKAGSSPIQHDIMLLG------ALTALGACMSR-LYGGKYHH-----------------SLQCFVVAPSASGKGILSYIRLHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQN------------------IMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEEVKKSYLSVLISGTPSQVQT---------IPTAEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEI----TAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLA.... 363
2 -2.590PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  14  5.................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGETGSLYLCTTAFLPLGLPASDDFWSQPDA...................................................................................... 118
3 -2.540PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  10  39TGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEHGAGEVDSI---DGQTVLDTPVQSLVDGQLGAPFVWPLVESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRF--------------------------------------------RAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDG-------RTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMP-FARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPDEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEG-DPLNGQPDQRTATAGCADYCVAVYR-------------MPAEAIGYHSALRFG-GKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL....................................................................................................... 559
4 -2.480PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  12  5...................................................................................................................................................................................................................................................................................................................................................................................................................................DSRHSKYVIRIICEGEKTEPLFFTSLCDKLLD----DRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAF----------------------EEAEKLIDDKKVNIAFSSRSFEYYL................................................................................. 149
5 -2.390HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  16  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQTNY-KQNQEKAWQVIKNTNIIQIWEDAGAKIN----VGSLRTGLLMKHRDIDFH-IYSSPLNLTDSFQAMARLAENPSIIECANLLHTAEACIEWHAWYQNEENELWIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVE------YYQAVIRDGVRDYSGFKE........... 188
6 -2.340PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  13  12.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSMEISEENLVTIEKYSLFQHLIDSNGI---DEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYH......................................................................................................................... 76
7 -2.270PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  15  6.................VLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHGKDFIAQRL----------APAEIPNDGKQTPCKGHP---------VFLAQHATGTCCRGCIEK----HRIGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 150
8 -2.190HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  7  11...........................................................................................................................................................................................................................................................................................................................................................................LQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSLNQAIEVFRTEDQDIEHNFEFGRTKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSYKMMFTMKAKNNRLAYLRDLFYS............................................................................................................................. 182
9 -2.080PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  11  5.................................ISISGRPGLFEVHTQVATSLVDGKRINANARNQVSLLSE--INIYGLEKEVPLQ------------VLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 137
10 -2.070PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  9  46FHHPDNKRERRVVMSVLKVIQKIH--EIYPEASVENI---GETDFIVTYEEQDGKGGVIHVAKIVMVVM-------ISFFGAAFSTAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELDV...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 209
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.