current user: public
If you have questions about the server, please let us know.

Query: gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850
# Score Template Links and tools%idFirst MDDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTGRGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIHQKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVIGMNLAPNDVIIAMQTASMGEAVLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSGNLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTLMPPEEAKEENDESENSDEDSAENNNSHAEAIENNTEALast
1 -1.910HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  14  3...........EYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPR-----ILRCSRIENIILIENVMICGVVAGNI-----SSVLDTAYNLGFANMPKVPVSNICGNYGLCVGIFVGCIAVALAEILHTFPIIYKRMK-------------------LRAGLGIIVISMAIGKALG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 145
2 -1.810HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  10  13......ESVGSLYWEKESNAALFDYERKFIRSGL------DISPIIMPISQYRNTPYRFLENRTDCFKGLPG-LFADSLP--DTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNE-IEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 173
3 -1.690PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  14  8...................ITITHHKILVLYKQGL--LHDMSK-PTEFLVGCRYYKGYMSPNNAERADRGYSSAWNKHHLETKMEGMKMVCEMFIDR------VSASKNYQKEKYTDKSALEYTKAMLEYLLVMLSVKGEEYTYSYIKKEVLKGHIP....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 185
4 -1.580PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  18  104................................................................NQLKDILETIIG-----EDVSI---VVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIK-------------NGDKETPVVVQTKKPD--IRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHR.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 219
5 -1.450PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  19  26...........VSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLF--KVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIVQAYLFMYQGFSSDLMMLMGN------------LMQW-KFRMPAIFKKALRSMTEKTVHDVCT-KTVWKADDVHKTAAAVRQYKERLGFSEQWMS--------EYVYNIVLLAKKEPKHKD..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 206
6 -1.430HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  13  1..................................................................................................................................................................................MAVSAPPKTKDMIAKTILQQIGGKRFTAMTGSRDFIDMGNGLRMSLARNKTSANRLDIIYDEGADLYNMRFYRRTFSKKTFECKTKDIAVHEGIYFDMLEEMFTMVT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 112
7 -1.420PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  9  1................................................................................................................................................................................................................................................................RADEFGYLFLD-PYQVLASSAIT-YEEMLRLHAIEGLLKYYGNSHLHAFAYLAATAFDGSYFAIYEALAAWWEARGLLRRGH--------SQRDLFNHLASFAIHLARGIATRVTVPP---------------LPGYHDSILEINSHGDTPASGAEHSGCARNLTPAQLDRFYQLLKFDCLCRDRSRNFPGWMPPSPLTEEERSNWMARITTPRSMEKYMPGLVKESPANLRRHGFIELFPCHPERPEEDNPTIVFFYYG................................................................................................................................................................................................................................................................................................................................................ 239
8 -1.370PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  13  3............................IDKGGPEAHFKRYIKEVKGKKTGLFITLGADPAGEHKVGRELLNEILAEFICQGDPKVIEEMKEMTPERQATWKQASTHPD----ENDLKNARKAFEG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 120
9 -1.280PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  17  2..........................................................................................................................................................................................................................................................................TLIKGEPGKGIVLKEYGKNIQKIVDWILTIEDREQRT-ANTCVELMRQLNPGVHTTKLWDHLFIMSNFKLDV-----DTPYPMPDIAVLGR----------ERVPYNHNKLKYKHY---------KNINLLIEQAILKEDGAE-----------KEDAIIYLGRLMKRLYSTWNKENVDDE..................................................................................................................................................................................................................................................................................................................................................................................................................... 156
10 -1.240PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  16  3................................................................................................................................................................................................................................................................................RKVKSIRKTMWGVYWK----LHDKRKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALTFGRAAYDIGRNDGSRMETGHAGRVELPTPAETDNHLTPYLYGTEE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.