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Query: gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTIRDLLAAESINLNGTPAGKTEALNQCIDLMAKSGKIADVEKYRKGVFAREEEGTTGIGMGIAIPHCKSDAVTKAGLAAMVVKDGVDFESLDGTPAKIIFLIAAPNTEDNVHLQVLSKLSVMLMDEQFTNSLINAGSVDEFLNIIDSAEKAKDEKEAAKEAKAKEPVEVKKDDVFIVAVTACPTGIAHTYMAAEAIEKKAKELGYQVKVETRGSGGAKNVLTDDEIAKAAGVIVACDTNVPTDRFDGKKVIECQVSDGINKAEELIKRIAAGDAPVFKASGKKEASHSSVGGKESVGHQIYKHLMNGVSHMLPFVVGGGILIAIAFLIDGFSVDLNSLPADQRANFGTITQAAAMFKGIGGTAFGFMLPILAGFIAMSIADRPGLAVGFVGGSIAANGTSGFLGALVAGFVAGYIVLLLKKVFSKLPESLDGMKPVLLYPLLGIFLVGVIMQFVVEPPIGALNTAINNGLNGLNGASAVVLGVLLGGMMSVDMGGPVNKAAYVFGTASIAAGNYNIMAAVMIGGMVPPIAIALATIFFKNKFTADERKAGPTNFIMGLSFITEGAIPFAASDPLHVLPACVVGSAVAGGLSMAFGCTLMAPHGGIFVVPTIGNPLMYLVALVIGSFIACGLLGLLKKKVSELast
1 -4.650PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  12  293...............................................................................................................DYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQ-----------ASDLLTEGKALSHCVGGSNEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN.............................................................................................................................................................................................................................................................................................................................................................................. 452
2 -4.390PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  10  61.DTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQ-------VPEDKLDETFTSIPP-KKQASGSSFEDID-MAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 239
3 -4.050PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  11  61.EDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPT-------QVPEDKLDETFTSISP-KGQASGSAFEDID-MAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 239
4 -3.750HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;  ali follow..  8  4...................NATDWNTALFEKMSD-----EQDKFRDWLKSQPPEEILHHTYEYTV-------------------------------REDIVMAMEQLELTDAQAQALLDSPTPLADDVIRDSIENRADDVCRAKEELRTTPIYPHSAAYAREHGELEQYRASNNVNRQCKESIEAAVREHFLSHDAAKGVIETYGMEVLSNTVQLQDWDGRYSRRNKEWAKTIPNDNPETVRCG-LNSHPAVLDGFIDLVREEQQRSRTQREKLEPSRPSVRDKLKQELPAHKSAAPKKR...................................................................................................................................................................................................................................................................................................................................................... 270
5 -3.490PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  8  1..................................................................................................MHIDFALPSNGTYNNAGSSRQLANYLEHED-LERMEKGLYTDSFFN--LTENNIYKSKVIKDIDSNIGQLLKTDAKFYAIHVSPSEKELQAMGNTEHEQAESMKRY-IREVFIPEYAKNFNKGLSEADIK----------GKIHFNRSHSDNELNMHCHLIVSRKDQSNKKKLSPLTNHKNTKKGPIKGGFDRKSLFQQAKLGFGRLFN............................................................................................................................................................................................................................................................................................................................................... 197
6 -3.390PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  10  4.........................ETLTYLLEHPDKITSEETQLRTVVEE-------------FPF---------------------------QAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARV-----YVEQKNFSKAKQAY------------------------------------LSLKYPEKSGFFADQIRA.................................................................................................................................................................................................................................................................... 306
7 -3.100HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  10  3........................................................................................................................QQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELP----VIEILRVSDKKNKF--------NVKSKKYNGKE........................................................................................................................................................................................................................................................................................................................................................................................................ 123
8 -3.080PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  6  1MSSDIVNWDPQFK-----PVKGIYEDRLRQFIDNGGDYRDLNLPKFYDRQRKRIDSTRVKVQYYQVPYDRHKPPVAPEKRPPWEEVVRRDRAGEIEWKDVVELDIPESWSSSGEQLVFEWDKTAFSGNGERTEYLLPLGRSSVSFYIECGNNGMFGVGRNNNSINPPDDDRYFHLQKADLVWPNWQARALYIDFWMLGDAAREL-------------------PDNSWQKHRARELGNLVMN--------MFDPEDVSTVDKCRKFLQKEFFDKY............................................................................................................................................................................................................................................................................................................................................................................... 274
9 -3.030PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  9  8............................................................................................DSTNIPIGTVFSFVSKYDYICNKAVQDISEDLIKIELNQNV----SINKIFNILKASQASENTQNLRKKHAPIKVLINRKN-----------------FNLYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFDTNESDKIKGDKNYYNSLENFEGYSYKKIYKCDFCDDIYDNLREATKHENSHFQHDEEILFHSSDANTNKESLYELTENELKNIKK........................................................................................................................................................................................................................................................................................................................................... 205
10 -2.910PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  9  63MRILPQLRRNGFKGDFHGISPVRLFKALLPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPK-------NICPEDFMAAHDNATRKI-EAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLES-----------IDEYYNEGKTQGICVFGSGYYKKADTLILS---ARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA.......................................................................................................................................................................................................................................................................................................................................................................... 322
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.