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Query: gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTILVCDDDKEIVEAIEIYLMQEGYDVEKAYDGIQAVEIMKNKKIDLMIIDVMMPKLDGIRATLQIRKESRVPIIILSAKTEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTTLSSNDAAGDKVYEAGGLLVNDDLKKVTVDGEEVKLTPIEYNILLLLLKNKGKVYSINEIYESIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEDNKLast
1 -3.660PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  14  3........................................................LDGFEAVGE-KTTTNKMTMTVMESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENAIKFCKTKRSKADGVDSDAAGKASSVTVRTTDV............................................................................. 98
2 -3.200PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  12  76.............EVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYS--------YKENVQLNLE--HQLVKFRVKLNG----DVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYGTVYTYTVNKVDIPYEIIDNNGN.................. 275
3 -2.510PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  9...LEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGH--------------VRTQEEITLILNDNLLSKDWVTDSWE---MCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLAL---KTLKVKDYKDVTASVLEDHLK....................... 193
4 -2.490PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  14  28......................................LKGVFLLRIAVVDGQGGGI-GKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLL.................................................................................. 136
5 -2.490HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  19  21..........................................................................................EMYQDDYY-----PAFLVDKVKDELQKVIDLLESGETDTEVIQE---GINDLQEEFDENDSEIETVARD-TVAYILEWFGIPIDIEEAIRERDW.............................................. 116
6 -2.400PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  136...LVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPF------VEGLEALETLQDGDR--VLISEACNHNRITSACNDIGMPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDHEAGVPVTNYGVFFSWAAWPDAL......................................................... 301
7 -2.200HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  10  73................................................LFADSLPDTFGNQIINEWFASKGLS----GEEITPLDRLCYVGMGALEFESSVLHIEELTELAKSVFTDRMAFQVQLRQEGRNIL................................................................................................. 166
8 -1.840HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  10  1......................................................................................LVGV------FCVEGFSVDVFIVHIREICSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELEYIFSLKDWIDKLAQRAAVLSLHREKLYDATQPVCEYYIFTLRRIL........................ 149
9 -1.790PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  8  14..............................................RIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDI--------PEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSR-----------EYY----------LLLHFEYLYHPFHATECGERI............... 169
10 -1.780HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  9  17..........................FMVGCGKQVPENIIQPDRMENILYDYHL--SISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRE--NKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSENDSVVGRVKDIVQTLYIKPDSAFAIKSVNGF........ 226
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.