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Query: gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTGRGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIHQKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVIGMNLAPNDVIIAMQTASMGEAVLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSGNLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTLMPPEEAKEENDESENSDEDSAENNNSHAEAIENNTEALast
1 -130.0001zvu_A mol:protein length:716 Topoisomerase IV subunit A  ali model follow..  37  1..............................MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQ----PKTTLDQLLDIVQGPDYPTEAIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS................................................................................................ 715
2 -127.0004i3h_A mol:protein length:1144 Topoisomerase IV subunit B, DNA topoisomerase 4 subunit A chimera  ali model follow..  47  649.....MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDH----PTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALE................................................................................................................................................................................................................................................................................................................................................................. 1138
3 -124.0002xcs_B mol:protein length:692 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A  ali model follow..  61  203.AELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKN----PDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL....................................................................................................................................................................................................................................................................................................................................................................... 691
4 -123.0002inr_A mol:protein length:514 DNA topoisomerase 4 subunit A  ali model follow..  49  15.MLEVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDN----PDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIK................................................................................................................................................................................................................................................................................................................................................................. 508
5 -123.0002xco_A mol:protein length:726 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A  ali model follow..  61  236FAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKN----PDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL....................................................................................................................................................................................................................................................................................................................................................................... 725
6 -123.0004ddq_A mol:protein length:502 DNA gyrase subunit A  ali model follow..  60  1MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN----PDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTGLETIEDEDLIE........................................................................................................................................................................................................................................................................................................................................................... 502
7 -122.0003nuh_A mol:protein length:525 DNA gyrase subunit A  ali model follow..  55  2..SDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD----EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANS..................................................................................................................................................................................................................................................................................................................................................................... 525
8 -122.0003ifz_A mol:protein length:508 DNA gyrase subunit A  ali model follow..  52  8.PDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAAE..................................................................................................................................................................................................................................................................................................................................................................... 502
9 -121.0004z2c_A mol:protein length:499 DNA gyrase subunit A  ali model follow..  59  2....QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDN----PEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQIL................................................................................................................................................................................................................................................................................................................................................................... 490
10 -115.0006bq9_A mol:protein length:496 DNA topoisomerase 4 subunit A  ali model follow..  46  9..ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDE----PKATIEQLCEHIQGPDYPTEAIVTPRAEILKMYESGRGSIRMRAVYRVE-----DGDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNDVDELMQHLFATTDLESTYRVNVNIIGLDRPQLKNLRTLLVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEY---PKQALIERFELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARA..................................................................................................................................................................................................................................................................................................................................................................... 494
11 -114.0003lpx_A mol:protein length:500 DNA gyrase, A subunit  ali model follow..  56  2................................RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDN----SELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHTTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITLE...................................................................................................................................................................................................................................................................................................................................................................... 494
12 -95.1002xkj_E mol:protein length:767 TOPOISOMERASE IV  ali model follow..  42  270.....HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRN----PQTSDEKLAEYIPAPDLPTAEIITPPEELLKIQTTGRGSYRMRAVYTIEK-----NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENTRLVIVLRSNIDAEAVMSHLFATTDLESSYRVNLNMIEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREE---DQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVAEAVQIKEQDLMPAET........................................................................................................................................................................................................................................................................................................................................................ 767
13 -94.3005eix_A mol:protein length:741 DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A  ali model follow..  45  244..EFMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPDDPSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQ----PKTTLDELLDIVQGPDFPTAEIITSRAEIRKIYQNGRGSVRMRAVWSKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVSNRVDMEQVMNHLFATTDLEKSYRINLNMILDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDE---PKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMS............................................................................................................................................................................................................................................................................................................................................................... 735
14 -72.3003qx3_A mol:protein length:803 DNA topoisomerase 2-beta  ali model follow..  17  280.EQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEM--SAYHHGEQALMMTIVNLAQNFSNNINLLQPIGQFGTRGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHP-----------MLPNYKNFKGTI--------QELGQNQYAVSGEIFVV----DRNTVEITELPVRTWTQVYKEQVLEPMTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMS--LWSLTKEKVEELIKQRDAKGRDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGAP......................................................................................................................................................................................................................................................................................................................................... 786
15 -72.1001bgw_A mol:protein length:793 TOPOISOMERASE  ali model follow..  16  256.....DPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFSNNIYLLLPNGAFGTTGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELE-----------------QMHPWFRGWTGTIEEIEPLRYRMYGRIE------QIGDNVLEITELPARTWTSTIKEYLLLGLSNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGRIWSLTKERYQKLLKQKQE--KETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDRGGNVPNKGSKTKGKGKRKLVDDE.................................................................................................................................................................................................................................................................................................................. 792
16 -70.4005gwk_A mol:protein length:806 DNA topoisomerase 2-alpha  ali model follow..  20  285.....GQTTTYLTYNDFINKELILFSNSDNE-RSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEM--SSYHHGEMSLMMTIINLAQNFSNNLNLLQPIGQFGTRGGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFL-YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLP-----------MLPSYKNFKGTI--------EELAPNQYVISGEVAIL----NSTTIEISELPVRTWTQTYKEQVLEPMLNKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKANYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDKEDLATFIEELEAVEAKEKQDGAPGFSSIS..................................................................................................................................................................................................................................................................................................................................................................... 795
17 -56.8004gfh_A mol:protein length:1177 DNA topoisomerase 2  ali model follow..  16  664.....DPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFSNNIYLLLPNGAFGTTGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDE-----------------ELEQMHPWFRGWTGTIEEIEPLRYRMYGRIE------QIGDNVLEITELPARTWTSTIKEYLLLLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR........................................................................................................................................................................................................................................................................................................................................... 1177
18 -41.1001suu_A mol:protein length:312 DNA gyrase subunit A  ali model follow..  31  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKFIK.......................................... 312
19 -40.6001zi0_A mol:protein length:307 DNA gyrase subunit A  ali model follow..  38  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE......................................... 307
20 -38.6003uc1_A mol:protein length:327 DNA gyrase subunit A  ali model follow..  39  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDLRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAESGDDNAVDANGADQTGN........................ 327
21 -36.2003l6v_A mol:protein length:370 DNA gyrase subunit A  ali model follow..  38  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE...................................... 349
22 -35.3001wp5_A mol:protein length:323 topoisomerase IV  ali model follow..  29  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MVASEDVIVTVTKDGYVKRTSLRSYAASNGQ-----DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILREKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDK...................................... 310
23 -30.8004ely_A mol:protein length:156 DNA gyrase subunit A  ali model follow..  47  2................................................................................................................................................................................................................................................................................................................................................................GSSSSGLVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVALYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR................................................................................................................................................................................................................................................................................................................................................................................................. 150
24 -30.6004elz_A mol:protein length:153 DNA gyrase subunit A  ali model follow..  47  2................................................................................................................................................................................................................................................................................................................................................................GSSSSGLVPRGSHMTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIAELMHILAS.................................................................................................................................................................................................................................................................................................................................................................................................... 147
25 -30.2003no0_A mol:protein length:276 DNA gyrase subunit A  ali model follow..  22  2...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SITVAVLQDGSIIPVE----------------ELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKI-----------VGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINDIPLSTKKSIPRTRWKLEDDEIIKVVIKKSE......................................... 276
26 -23.4004mn4_A mol:protein length:259 DNA topoisomerase 4 subunit A  ali model follow..  14  1................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SNASEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 243
27 -9.5005mc6_h mol:protein length:1287 Antiviral helicase SKI2  ali model follow..  14  301.......................EWAHVVDLNHKIENFDE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTV---VAEY--NMTKTIYTSPIKALSNQKFR-----DDVNIGLITGDANCLIMTTEILRSMLGADLIRDVE-DEVHYVNDQDGVVWEEVILPQHVKFILLSATVPNTYEFAN-VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES--GRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYANFCNNKEKSQIHMFIELERGIAVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMARAGRRGLDSTGTVIVM---NSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEM-IKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDP....................................................................................................................................................................................................................................................................................................................................... 910
28 -9.0703h0g_A mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1  ali model follow..  10  201.DLPEKRLLSPLEVHTIFTHISSEDLAHLMIITVLP-----VPPPSVRPSISVDGTSRGEDDLTHKLSDIINANVRRCEQEGAHIVSEYEQLLQFHVAT---YMDNEAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFS--------RTVITGD--PNLSLD-ELGVPRSIAKTL-PETVTPY-----------------NIYQLQELVNGPDHPGAKYIIRDTGERIDLRYHKRAGDLRYGWRVERHIRDGDVVIFNRQP-SLHKMSMMGHRIRVMPYSTFR-------NADFDGDEMNMHVPQSEETRAEIQEITMVPK-------QIVSPQSNKPVMGIVQDTL-RKFSLRDNFLTRNAVMNIPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSEIIYGVVDKKTVGA-SQGGLVHTIWKEKGPEICKGFFNGIQRVIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYR----TLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVRNAMGDIIQFAYGED......................................................................................................................................................................................................... 877
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.