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Query: gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656], from E.rectale |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 | |||||||
# | Score | Template | Links and tools | %id | First | MDDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTGRGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIHQKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVIGMNLAPNDVIIAMQTASMGEAVLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSGNLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTLMPPEEAKEENDESENSDEDSAENNNSHAEAIENNTEA | Last |
1 | -66.000 | PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A | ali follow.. | 21 | 1 | ................................RSIPSAIDGLKPGQRKVMYVMFDRKS---NSELKVNTLVGNVLGQAYHHGEAALSMTIVGLAQNFSNNVNLLEPRGQFGTRGGKDAASGRYIFTALPKIARALFPATDDALLDYLED-DGQKVEPHWYIPVVPQVLLNGAEGIGTGWSTSVPNYNPHEIVANLRRRMAGE-----------------DVVPMKPWYRGFNGDVEEFGPGRFKISGRVT------QIDEKTYEITELPIRTWTSNYKELLEERIVDKIPATIKDYKEYHTESTVNFIVELTAKGQAEIADKGVEAFFKLSCQISTTNMVLFDQDKKYTSAEEILEEFYLLRLSYYQKRKEYLVDQLKLMYDKLSNQARFVQMIISRQLVVSNRKRADIVAELRQKDFISADSDFDYLLNMAIYNLTKEKVDKLLKERDHKEEELKILIGRSPQN................................................................................................................................................................................................................................................................................................................................................................................................... | 441 |
2 | -9.320 | PF05086.12; O15924_DICDI/5-925; Dictyostelium (Slime Mold) REP protein | ali follow.. | 16 | 492 | ...................KSVIKFIQLCIVMKELLDFMT------RSINYETFK-------------SIISELLG---------MSERVLNLEQDVKKLKDLLLKKSKKSTIDDESELLSRVSNHRLSK-SDNYLKFVDSITSTLCVEYDSNSIEHKICRSEISRFQPTGDIIKMNSLFSSFTPSNINTVSQQSEEDLKRKYSLMSSDLSGLLKVFSFGDVSNGFSITN-SNLYNRYEEYMGKTRVITAFFFAP-------IQLTNFIFQTDKITNDKNISRQIKSIKIYNRSYINIE--KVGGNTIDSVKSGFSKVVQINS-FTISCLNISFSSVLIS----KNKLNNLSSLVADYYVKSTEL--------LRKADKLEQLLK----------KYIENFQKLNTITETEEDIIEAFDFESSAGDDI........................................................................................................................................................................................................................................................................................................................................................................................................................................ | 903 |
3 | -7.310 | PF09899.9; V4J3D1_9GAMM/276-1132; Putative amidoligase enzyme (DUF2126 topsan) | ali follow.. | 17 | 387 | ...........LDLVANLEASAAETGLRIIIEAVTPDIEVNVHPASSSILYEEARLTRLGTEKFMLDGRHTGTGGGNHVTLGGPTPADSLIQSLITYWQHHPSLS-----GTFIGPTSQAPRVDEAR-----DDSLYELA---IAFQQMPKGQIKQPWIVDRVLRNLLVDGRQGLVEFRAFEMPPHARMSLAQMLLLRLHDRFLLPHFVRQDFGDVIC--DLQRAGYAFESAWFEPFFE---GDLITGNGIRMELRGAIEPWHVLGEEVTAQGTSRFVDSSVERMQ--KVNGMTGARHALTCNGRRVPLH-PTGRRGEFVAGVRFKAWNPPSGLH----TIASHNPLVFDVVDLCTYYVSHPGGRAEQRFPVNSYEAESR........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 824 |
4 | -5.960 | PF03989.13; GYRA_HAEIN/641-686; DNA gyrase C-terminal domain, beta-propeller | ali follow.. | 47 | 1 | .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITD................................................................................................................................................................................................. | 46 |
5 | -5.900 | PF02689.14; HELI_EHV2/2-789; Helicase | ali follow.. | 15 | 4 | ...................................................................................................................GAGFILNMTSDSKVRAIVGRIRGLAAKTVPFDSQFDPEDAEGPFLP--FSTFLITGTAG--AGKSTSI--SALYQSLNCLI------TGATAVAAQNLSNGLKT-YCPT---------IYSAFGFKSRHINILPRHGRNAPARDMEGIQRNEL-YWPVISDILGEFTKKKQRGQYEHLTGVIDEAGSHILTAVVLYKSGAVPCVVVGSPTQTDAIQSTYNLTFLMKHEAVSRYVDLNHNWALFINNKRCTLLKTLEYNLDISPRMVDYIDRFVVPKSKILS-TRLFVSHREVKAYLTALHETLSLNQGGATAEADARLFTCPVVCEVFT-DTFNEYREAVNLPGLTVTEWLQKNLCRLSNYSQFIDQDLSAVHIETGEESTKVTYLVKYVKNSYVSLNGK................................................................................................................................................................................................................................................................................................................................................. | 450 |
6 | -5.700 | PF15449.6; F7B3J9_HORSE/1-1249; Retinal protein | ali follow.. | 12 | 173 | ....................................DFPEPLVKAHQHA-YTY------------------------LHS--CLCKYEAVLHITHQATQTQELLQPMVSF--------LLLCFDEVNLGEISKDLLQEVREDLA-----WPLKKGEPQGQPDLLQQLLQYTVSKLQVGAVASLTGSFLEGSSSTTASHLGKKLSTKRGADERLLRALPGVQ-EDSGIGADNDSVLLADKLGKCPLSRPLTAKVQPAAQGGTG--TTSRPPGMGKSNPHESLGM--SSRLMDTPSLSEGEDSSLEEEEDTSYPRPRSSPAGPESTFQLHPGRLR---------QAQEMILKMKEAISERIKF---VPLPSGHQDWAEEEERRTAVPPRPSTVSGSRREPERQRRSQSEGCLKSHMEDATLQELRRVQRDLSQRLEAFYTLGTQRQGQGKEQVLHPRAAARRPDNNYRVPPSNTISKLKASFTK.................................................................................................................................................................................................................................................................................................................................................................................. | 656 |
7 | -5.580 | PF02514.16; Q2JMZ0_SYNJB/187-1302; CobN/Magnesium Chelatase | ali follow.. | 12 | 714 | ............SLLRALEGEYILPGPGGDPIRVLPTGRN---------IHALDPQSIPTAAAIKSAEIVVERLLAREYPEGTDNIKTYGESLAQVLCL--PKPDALG------------------RVNKVELIPLEELGRPRIDVVVNCSGVFRD------LFVNQM-------AVKLAAAAVPPELNFVRKHALQQAEELGLTLEQAATRVFSNASG-SYSANSSWEDESELREMYLSRKSFAFGSNLPNQQMRQLFEASLKTVDVTFQ--------------LDSSEISLTDVSHYFD-PTKLVQSLRPDGKAPSAYMADT-----------------TTPNAQIRTLSETIRLDA--RTKLLNPKWYEGMLK-----HGYEGVREIAKRLVNTS-SATAGAVDNWIYEETNETFIKDEAMRQRLMNLNPHSFRRIVGSLLEVHGRGY................................................................................................................................................................................................................................................................................................................................................................................................................. | 1108 |
8 | -5.570 | PF00073.20; POLG_CXB4J/358-524; picornavirus capsid protein | ali follow.. | 11 | 1 | .....................................................................................................................................................FDVTPEMN--IPGQVRNLM-------EIAEVDSVVPINNLKANLMTMEAYRVQVRSTDEMGGQIFGFPLQPGASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGK--FLLAYSPPGAGAPDSRKNAMLGTH---------IWDVGLQSSCVLCVPW--------ISQTHYRYVVDDKYTASGFISC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 165 |
9 | -5.530 | PF03033.20; U80A2_ARATH/195-339; Glycosyltransferase family 28 N-terminal domain | ali follow.. | 19 | 1 | .....................................................................IVMLIVGT---RGDVQPFVAIVRLATHANFK-EFVLTAGEFYPLGGDPKVLAGYMVPIQRNQMKDIIYSLLPACKEPDPDSGISFKADAIIPPAYGHTHVAEALKIPIHVFFTMP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 137 |
10 | -5.510 | PF00305.19; D7SLA9_VITVI/216-884; Lipoxygenase | ali follow.. | 11 | 190 | ........................FSRQTL---------AGLNPYSIQLVKEWPLKSTLDPKIYGPPESAITTEIVEREIKGFMTVDEALKQ-KKLFIIDYHDILLPYVSEVRQIKGSRALFFPDNTLKPLAIELVRPPMDGKPQWKQVFTPSWEATGSWLWKLAKTHFLAHDAGYHQLVSHW-THCVTEPY----IIATNRQLSAMHPIYRLLH----PHFNADGIIPGKYSTEISSAAYGLQLISRGIAVEDPSSPHGLKLAIPDYPFANDGLLLWDAISMVKSDAELQAWTEIRTRGHEDKLKTPQDL-----IGIVTTMVWVTSGHHAAVNFGQYAYAGYFP---NRPTIARTNLPSEDPTEEGWRRFLHKPENELLACLPTQLQAAKVL-TVLDVLSSHSPDEEYLGEHLEPAWGADPLIKAAFE------------RFSGRLKEIEGIIDARNEDKNLKNRH................................................................................................................................................................................................................................................................................................................................................................................................ | 657 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |