current user: public

If you have questions about the server, please let us know.

Query: gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .
# Score Template Links and tools%idFirst MDKYEYNLKLDQIKALSAEEGYMSAAEIADSINWNKIKNVNTLVKIGEIYEKAERYQDARDILLMAYDRSPIGRMIIYRLAEVAIKMGDYDAATEYYDEFVEIAPHDDMKYVLRYAIKKGQGASFDELITILEEYKDEEYTEEWAYELAYLYHKAGKADKCIDACDELILWFGDGPYVERALELKMLYQPLTKAQEEKYRRFKAEKEKPAKIKDEAEVTEIGAMEMVKGGEIVHDDVTIPQITVNQEKFNTVNLQQEIAKGMQQIMEAKGKNEVADTMDTIKKIVEDIPYLKLEKEQEEYAQQPEETEHIATDEEIDGSLKLNFKELLGEDADGQMSMVMSEKTQLEHQITGQMSIQDVLEEWEKTRHAAEIALKEAEQQKLESAKARALQEAGDIMERLNDVIPKLDAGVTPKELLEEEYLKVPVDIIEQKAAVKEPEEEQKPDMQELYAEETVDEVQEPQEAPEDTIDEAQEPQEAPEEAIEEAIEEVQESREVPEEAADEAREPVGEPEDIIMAEESEKDEILMQPTTMMPEITDDMLNVDDDTSDDETSQEKENVSEKRDFDHVTSFIEQEIAKMTAKNPGLEKKLDMAKTRKMPDISLPEDLDSEEDDSKLKETKHIKELTSEQKAIFSYFIPVKGMEDQICKAYNAVLDHFNRKENASTGNLIIQGEQGCGKTMLATSFIKVLQKDGEQLTGKMGKIDAAALNKKDVQQVVRKITGGCLIIERAGDIDRSIAAQLSFLMEHDITGTLYILEDTSKGIKKALSMDEGFASKFTEKISVPIFTNDELVLFAKSYSAELGYKIDEMAILALHNRISNIERIDQATTLTEVKDIIDEAIDREAHSGLKKAISILTARRYTDDDRIVLKEDHFREKLast
1 -16.000PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)  ali follow..  10  32........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDDLKNIERQKDAIVANTRQFVSKLPAN------NVLLTGARGTGKSSLIKACLNAFVRDG-----RLVEVDKDDLG--DLGDIVELVAQ-VIFCDDSFEEGESGYKSLKSALDAQSDNVLIYATSNRRHLGEVVEEKISLSERFGLWLSFYPPKQDEYLAIVGHWLRHFGCTDEDI--AAARGDALVWALERGSRSGRVAWQFARDWGGKH................................. 259
2 -14.000PF13525.6; D3V9W2_XENNA/28-237; Outer membrane lipoprotein  ali follow..  16  4......................................PPSQIYSIGQEKLQEGNYKAA-ESLDNRYPFGPYSQQVQLDLIYAYYKSAEFPLAIASIDRFIRLNPTHPNIDYVWYMRGLVSRAAFRDFNHLIHDYPSSQYSAD-ELAVVEYYTKRSAYVAVVNRVEQMLRDYPDTHATREALSMESAYKELGLIAEAD....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 205
3 -11.600PF14532.6; C6X8G9_METGS/136-273; Sigma-54 interaction domain  ali follow..  16  2................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GKSPVISELRQRLEQIAGVKSP-----LLLIGEQGSGAELCAKFLHN--------PDTPWLSLTDYEQLATAPLDILEQVQEGMLFIPEVADLSKNQQKGLQLLLARADKYGARVVCVTAKSLPQLVVAG-RFDNLLLQSISATSLRIPNL...................................................................................... 138
4 -11.400PF16918.5; V9XE69_9NOCA/412-767; Protein kinase G tetratricopeptide repeat  ali follow..  12  64.......VHSEPQQTLDSLRHARENGVGRVVGASDVSFSKEITLAEVRAHLDLGQVDSAVEILTRLERESGDDWRMDWYAGIAELLQDDYEAAFTRFDKVLQALPGEIAPKIALGATAELTLDPDAWRRFCEQSYRVVWRTDH-AFGLARQLTARDEIRAAVDVLDEVP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 235
5 -11.400PF13429.6; Q39U81_GEOMG/198-480; Tetratricopeptide repeat  ali follow..  10  117............LELGIAMKDYRTTADMLTRQE-PQEQDAYFWSLVSQVHRGTGATGESIRCYREALRRAPTDSELAAEYVWLLLDLDRREELRELLIAWKGRENTMPSLYEPFGAALAYLG-EYHKALPYFQARYSQKRSDAWLAAYADTMEQAGWVEAAFLE--------------LNALALSRR.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 283
6 -11.100PF09613.10; F5XVY8_RAMTT/1-126; Bacterial type III secretion protein (HrpB1_HrpK)  ali follow..  12  2.......................TSAHIDKPL-------VDALAAVFYVGSDLEEDAQTLVVLRAIRRLRPHAPTLAVVEAQQLVENGDLQGARLLLEEADACSPGTPVKAMFALVLQQQRNGLWQAYAQEARNLPPDPKALSILDYLDRI...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 123
7 -10.800PF05621.11; B7J739_ACIF2/21-211; Bacterial TniB protein  ali follow..  16  14...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AQANRLLDNLRSLMEKPVRPRMPNLLIVGDSNNGKTTVIRRFQKLHGEGVNEDAEPVPVISASKLRYQ-VVHLMRDCHVRILVIDEFHSLLTGTVTKQREVMN-NELAIPIVGVGIRE-AVRVLHTDPQHASRFD-VVTLPPWE.......................................................................................... 188
8 -10.800PF13512.6; Q6LMX6_PHOPR/21-165; Tetratricopeptide repeat  ali follow..  13  9......................................PPAELYVTAQQALQSGSWTTAIERLETLDSRYPFGAQVQLDLIYAYYKNDDLALGEATIARFNRLNPAHEKSDWVLYMR--------------LTQMAQDRSFMHDIFSIDRHDRDPEPARKAFRDFKRLLDRYPNSQYAADAKA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 143
9 -10.600PF04733.14; COPE2_ARATH/7-293; Coatomer epsilon subunit  ali follow..  16  112...............FMHEEDYNETLKHT-----HAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMG-NFDEAETLLLEALNKDAKDPETLNLVVCSLHVGKSSS--RHLSQLKLSHPEHILVKRVSSAEDNFERAVQL........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 285
10 -10.500PF09295.10; Q6CDA2_YARLI/40-455; ChAPs (Chs5p-Arf1p-binding proteins)  ali follow..  15  201............MAFMRITRLYDRGLEIVRRL----TEYPEVVSLIARIQLLMDEEVEAVKTMVKGLEENGRDADLLSLQAEFLLSKNREDMALGCATRAVNSAPSESKLWTELVQVYIRQK-DWENALLTLNSCPMFTYHEH-VYELTAIVHEIG--DQLLEVRSRVFVM--DEEY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 415
11 -10.500PF12569.8; A7S752_NEMVE/188-686; NMDA receptor-regulated protein 1  ali follow..  13  195...............YDHLRDTEKALDYINKAIDHTPTLIEAYMVKGRIYKHAGDIDKAAEIMDEARAFDTADRYVNCKCAKYQLRANQVQKAEDTCAMFTRDGLQAA---------------------ENLNEMQCMWF----QTECGRAYQRLGKMGEALKKAHEVEKHFEEHTYCMRKMTLCAYIKLLRLEDVECYVRLHDKPLTATNEDDDANAGNLSAKELKKLRSKQRRAEKKAQLQESKKVNASKDAEKKAEGSKESPFDPDDLARVSDPLDQALSFLKPL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 465
12 -10.400PF17825.1; G1PD96_MYOLU/1-1455; Family of unknown function (DUF5587 topsan)  ali follow..  3........................DSSILD--QWKASLIGE-------------EFHEKKTVTGMMTQINCEFEEIV----------SSNPNSPIEVDEAILHTQKDYTEVFTPISCSEKCPAFQAQNQDLFEEIIFTNNLMTYKSYLPTLDTLLSR--KLFLIKDPLL--FRECFSFQGDLKDLMKEDFYVDKENFCQEKLEDTVGLNEAIPSVFSECELIAPNLDQEVGIPSPSELKESLHLVPEIITYEDENEYEKLFKRDPTTKHAIDTEDIKCSSTEILAIPSQCKPEHHKPEELEEELEMPLPPLHLANQQSSVNSLCTGLQTFPSSPACKISLLTAEKSANEDCTVWQSESCRSFQNSLLLPVPRTEEPNSQYSVTDLKKIFSIEEESLAVTPVSPEWWKQAGLNLREHLTTYFSDQDLPSDDTKLEVFLPTKVPELESWLDHKSCSSPIVLMNEESTSDNLLLQQKSPSPAEVPDLCFSDEYSSVHSPTKEEKPKDDQELVSSIIQNNENKDCLELDCTELSTESASSSKIEKASFKCSKRRENHLDLLSDFIMMRNKHKTCTSTTEVTDSDEKNEFQDKEEHSLTLQEESPIVYTNKTIEKINQEREADNVIEIQASDSQCHAYC-------LEAAATPILKELGCLCTLPVASWKFATVVSDAIHQGTNAERETTFRHAGLLHLLVTSNAKDVYKSIL-GSYLDDIWRQLEIVQFIREKMPETNYK-IQELQCQISEQQIKVLIIIRMDSDDEKRLLIE............................................................................................................ 769
13 -10.200PF03266.15; NTPTH_METAC/3-167; NTPase  ali follow..  12  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RIAVTGSPGVGKSTVVAKTAEKLAEKPGFKIGGIRHVNLDDLERIGANAVRNALACDLVVIDEIGPMELISVSAVEEVLESDKPVLAVLHHSSRHPLAQRFRKGFEV-------LTVDKGNRDELPE.................................................................................... 162
14 -9.960PF13245.6; B1YJE6_EXIS2/332-475; AAA domain  ali follow..  15  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QREAIELAVKAPLMVLTGGPGTGKTTVIKGILHALQEIHDWPTGRAAKRLSEATDVP--AMTIHRLLKKVLIIDESSMIDIYLLSSLLRAVPNGMK---ILFVGDRDQLPSV............................................................................................................... 142
15 -9.910PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain  ali follow..  13  4......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTLRQYIGQDKAKHNLEVFIEAAKMR-----EETLDHVLLYGPPGLGKTTLANIIANEMGVNVRTTSGPAIERPGDL-----AAVLTSLQPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVFTLVGATTRAGAL---SAPLRDRFGVLSRL.............................................................................................. 159
16 -9.770PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit  ali follow..  15  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QPAIITRFQKILSNNELAHA-----YLFVGPGGSGKMSIAQWLSLRLQRILSGNHPDIVYAAGRQIKVDEIRRLKAEFS-KIFIIKDADKMTNGAANSLLKFIEEPGAGVYIFMLTTNKS................................................................................................................... 141
17 -9.620PF13432.6; A1AQL4_PELPD/29-93; Tetratricopeptide repeat  ali follow..  18  1...........................................SRLSDAYLKLNLVDDALHTARRGVEKFPAYVAGQRSLALACYAKGLMDESRQALEAVVAAVPEDA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 65
18 -9.360PF13371.6; Q1LJ97_CUPMC/200-272; Tetratricopeptide repeat  ali follow..  13  1.............................................LKAIYLQESRWQRLLAVQNRLVILLPDSIEEVRDRGLAYANLECFRPALEDLEAYVQARPDAADSTQIRDRM........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 72
19 -9.280PF01078.21; Q8EJV7_SHEON/193-396; Magnesium chelatase, subunit ChlI  ali follow..  21  2........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LSEVIGQYQAKQALEIA------------AAGNHNLLMLGPPGTGKTMLASRMMALLPALNYEEALEVAAIHSRPFRAPHHTCSSISLVGGVLFLDEVAEFPRKVLDCLREPMETGESRFQLIAA-TPDQIQRYLARLSGFIDRFDLTIEVPKLPAGTL...................................................................................... 204
20 -9.060PF17826.1; G1SXV9_RABIT/101-469; Family of unknown function (DUF5588 topsan)  ali follow..  16  7FEDSVFEERPER-AKRCEPQWFCEETESSDDVE-----ALTTKKFKGDLAYRQGEYQKALQEYSSIAEKLSPTRDIQEGQARCLAHLGRHQEALEIATELENKATNTDHLLYLQFAICSSLQ-NLEKTIFCLQKLISLHPFNPWNWKLAEAYLSLGPALSTSLASAQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 184

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.