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Query: gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIREINVSEITAAIKEMCIQANHFLSPDMDKALKAATANEESPLGKKILNQLQENLKIAGEDMIPICQDTGMAVFFIEIGQDVHFTGGVLEDAINEGVRQGYTDGYLRKSVVKDPLIRENTKDNTPAVIHYSIVSGDKVKITFAPKGFGSENMSRVFMLKPADGIEGVKNAILTAVSDAGPNACPPMVVGVGVGGTFEKCAIMAKKALTREAGTHSDIEYVAELEKEMLEKINNLGIGPGGLGGSTTALAVNINTYPTHIAGLPVAVNICCHVNRHVVKELLast
1 -7.340d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  13.........................LLDLVFLLSSRLSEAEFEVLKAFVVDMMERLRVSQKWVR-----VAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAG--------------SQVASTSEVL-------KYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYL................................................. 195
2 -6.540d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  3...........................................................................................................................................................................................TLAIDIGGTKLAAALIGADGQIASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLHFPLVKTLEQLTNLPTIAINDAQA........ 108
3 -6.460d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  14  3...........................................................................................................................................................................................IATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMS...................................... 58
4 -6.130d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  1..........................................................................................................................................................................................MYYGFDIGGTKIALGVFDSTRLQWEKRVPTPHTSYSAFLDAVCELVEEVGIGIPGMANVPAASGKPLRADLSARLDRDVRLDANCFA........ 110
5 -5.660d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  13  2.........................................................................................................................................SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGV............................................ 102
6 -5.640d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}  ali model 3D-neighbors follow..  12  6.IRQGAKEPYPEFVDRLLSQIKSEGHPQEISKTDTLTIQNANEECRNAMRHLRPEDTLEE---MYACRDIG.................................................................................................................................................................................................................. 75
7 -5.590d3epqa1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  25  1..........................................................................................................................................................................................MLGGIEAGGTKFVCAVGREDGTIIEFPTKMPDETIEKVIQYFSQSLQAIGIGSFG........................................ 59
8 -5.560d1wb4a2 c.69.1.2 (A:803-1077) automated matches {Clostridium thermocellum [TaxId: 1515]}  ali model 3D-neighbors follow..  14  19..................................................................................................NPCPQAGRIVKETYTGINGTKSLNVYLPYGYD----PNKKYNIFYLMHGGGENENTIF-------SNDVKLQNILDHAIMNGE--LEPLIVFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTW................................. 159
9 -5.320d2i1sa1 d.343.1.1 (A:4-188) Hypothetical protein MM3350 {Methanosarcina mazei [TaxId: 2209]}  ali model 3D-neighbors follow..  12  1.........................................TFEKVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNPKTGMLDKIGAEGDDFDAFGGPLVSEKKAKLSDYFTLENKEALYTY---GDNWQVKVRLEKILPRKEGVEYPICT------AGKRAAVPEDSG-GVWGYEEMLEVLKDSEHEEYEDTVLWLGDDFDPEYFDPKDVS................................................ 184
10 -5.280d1hwxa3 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  11  5.....DDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVI----EGYRAQHSHQRTPCKGGI-------------------RYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIA--------------DTYASTIGHYDINAHACVTGPISQGG..................................... 207

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.