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Query: gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656], from E.rectale

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLAEDRCKKILDILDSMGSVTVQQLMDELDTSESTIRRDLVAMDKKGYLTKVHGGAIVNNTNIHTQDEKVINRLKQNRNEKEQIARYAASLIVDNDFVYIDAGTTTAVMIDYITAKNVVFVTNSLTNAKRISDRGYTVYILGGEFKSTTEAIVGDEAVVTLDKYNFTKGFWGTNGITVKNGFTTPEIKEAMVKKKSMENSKEKYILADDSKFSQVSSIKFADFEDAVIITNALSNDNYKKYKNIKEVLast
1 -34.700d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  12  3............................................................................VEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI------------DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLXDIADIVIVG..................... 140
2 -34.600d1uj6a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  5..............................................................................SYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKG-------------VVGVPTSRATEELAKREGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPV................................ 128
3 -17.000d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2......KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLR................................................................................................................................................................................................ 50
4 -15.900d4awxb1 a.4.5.62 (B:1-79) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  22  5.......MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISETS............................................................................................................................................................................................... 53
5 -15.600d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}  ali model 3D-neighbors follow..  19  9...FSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS................................................................................................................................................................................................. 59
6 -14.300d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  16  19.ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVR.................................................................................................................................................................................................... 68
7 -13.800d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  26  3TVRQERLKSIVRILERSKEVSGAQLAEELSVSRQVIVQDIAYLRSLGYIVATPRGYVLAG........................................................................................................................................................................................... 64
8 -13.600d1qbja_ a.4.5.19 (A:) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  6..QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT................................................................................................................................................................................................ 58
9 -12.600d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  1MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG................................................................................................................................................................................................ 55
10 -12.400d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1LDMAEIKEKICDYLFNVSDSSALNLAKNIGLKARDINAVLIDMERQGDVYRQ................................................................................................................................................................................................... 53
11 -11.900d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  14  13DVATHFRTLIKELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAGTVVEKN.......................................................................................................................................................................................... 76
12 -11.800d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  11  1...RSNAEIVCEAIKTIGIATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP.............................................................................................................................................................................................. 56
13 -11.300d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  29  24....................VLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRK.......................................................................................................................................................................................... 64
14 -11.200d1xnpa_ a.4.5.64 (A:) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  20  11VLGNETRRRILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAGLIES.................................................................................................................................................................................................... 60
15 -11.100d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  25  11........KEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITR.................................................................................................................................................................................................... 53
16 -11.000d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  13  27AIADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKKEVK..................................................................................................................................................................... 108
17 -11.000d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  14  12ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK..................................................................................................................................................................................................... 61
18 -10.900d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  4.PAGFAEEYIIESIWNTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN.......................................................................................................................................................................................... 69
19 -10.900d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  24  3...NDRQRKVLYCIVREYIENKKPVSSQIEFSSATIRNDMKKLEYLGYIYQPHTSA............................................................................................................................................................................................... 62
20 -10.700d1p41a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  13  2FRRSGRLVDLTNYLLTHPHIPLTFFSERYESAKSSISEDLTIIKQ.......................................................................................................................................................................................................... 48
21 -10.500d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  32.VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAGPLLT........................................................................................................................................... 138
22 -10.400d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  11  1..EYTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTLK.......................................................................................................................................................................................... 59
23 -10.300d2heoa_ a.4.5.19 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  1...DNLEQKILQVLSDDGGVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPK................................................................................................................................................................................................ 53
24 -10.300d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  5AKQEELVKAFKALLKEEKFSSQGEIVAALNINQSKVSRMLTKF............................................................................................................................................................................................................ 53
25 -10.200d3e6ma_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  15  47........RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKG......................................................................................................................................................... 147
26 -10.100d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  8.......RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT..................................................................................................................................................................................................... 50
27 -9.920d3mexa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  41........HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRREEGLAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQSLAAQ........................................................................................................................................................ 142
28 -9.860d2pn6a1 a.4.5.0 (A:1-60) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  19  7........RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK..................................................................................................................................................................................................... 48
29 -9.750d2p5ka_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  28  2..KGQRHIKIREIITSNEIETQDELVDMLKVTQATVSRDIKELH........................................................................................................................................................................................................... 48
30 -9.740d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  10  37.........AFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEA......................................................................................................................................................... 136
31 -9.720d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  40.........VLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQA......................................................................................................................................................... 139
32 -9.720d3bjaa1 a.4.5.0 (A:1-138) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  14  37.........VIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKGEETKKQVDVQYSDFLKENCGCFTKEEEGILEDLLLKWKKH......................................................................................................................................................... 136
33 -9.690d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  25  15VMLEDTRRKILKLL-RNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK................................................................................................................................................................................................... 65
34 -9.660d1y0ua1 a.4.5.5 (A:1-87) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  26.VTNPVRRKILRMLDKG--RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERWVVTDA.......................................................................................................................................................................................... 83
35 -9.590d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  1MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ.................................................................................................................................................................................................... 51
36 -9.550d2jsca_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  24  7ALADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG................................................................................................................................................................................................ 60
37 -9.460d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  22  4...DEFDRKILKTIIEIGPVGLNALAASLGVEADTLSEVYEYLLQAGFLARTPRGRIVTEK.......................................................................................................................................................................................... 65
38 -9.450d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  14  16..........AGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADV.................................................................................................................................................................................................... 56
39 -9.430d2p5va1 a.4.5.0 (A:3-65) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  23  2LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ.................................................................................................................................................................................................... 52
40 -9.390d1on2a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  20  6...EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIEKYRGLVL............................................................................................................................................................................................. 61
41 -9.370d1jmrb3 a.4.5.33 (B:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  1MNTLKKAFEILDFIKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDK................................................................................................................................................................................................ 56
42 -9.330d3cjna_ a.4.5.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 246200]}  ali model 3D-neighbors follow..  15  42........RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLAN......................................................................................................................................................... 142
43 -9.330d2lkpa_ a.4.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  28ALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAIYHSEHLHL.................................................................................................................................................................... 109
44 -9.260d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  34........RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKK.......................................................................................................................................................... 133
45 -9.230d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  46.........ILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRF.................................................................................................................................................................................................... 87
46 -9.200d2fa5a_ a.4.5.0 (A:) automated matches {Xanthomonas campestris [TaxId: 339]}  ali model 3D-neighbors follow..  11  42........RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRREAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLERLIDRLAKD......................................................................................................................................................... 142
47 -9.130d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  35.........ILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGV......................................................................................................................................................... 134
48 -9.130d3eyya_ a.4.5.0 (A:) automated matches {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  21  16...TPQRQLVLEAVDTLEHATPDDILGEVGINISTVYRTLELLEELGLVSHAHLG................................................................................................................................................................................................ 72
49 -9.110d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  8  39.........VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATL................................................................................................................................................... 129
50 -9.020d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1................................................................................................IVGVGTGSTAAHFIDALGTMIEGAVSSSDASTEKLKSLGIHVFDLNEV--------------------SLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILXANRGADVALIGT.................. 117
51 -9.020d3bpva_ a.4.5.0 (A:) automated matches {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  12  34.........CLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIERERGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEAVRM..................................................................................................................................................... 137
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;